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aphid_transmission_protein_P5
Euk-VirRose_spring_dwarf-associated_virus
aphid_transmission_protein_P5__YP_001949738__Rose_spring_dwarf-associated_virus__474454
Identity
- Accession:
- YP_001949738 ↗
- Protein ID:
- aphid_transmission_protein_P5
- Kingdom:
- euk
Quality
67.1
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Tolucaviricetes›
Tolivirales›
Tombusviridae›
Luteovirus›
Rose_spring_dwarf-associated_virus
TaxID: 474454
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 71-218
Domain cluster:
rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00894.25 best | Luteo_coat | 117.8 | 4.70e-34 | 98.7% | 96.4% |
D2
medium
residues 248-316_328-359_413-451
Domain cluster:
rep: readthrough_protein__YP_001931932__Tobacco_vein_distorting_virus__192203__D257-298_326-349_384-436_452-463
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01690.22 best | PLRV_ORF5 | 92.9 | 2.80e-26 | 73.6% | 21.4% |
| PF01690.22 | PLRV_ORF5 | 44.8 | 1.00e-11 | 28.6% | 7.2% |
D3
medium
residues 317-327_360-412_452-484
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01690.22 best | PLRV_ORF5 | 61.5 | 9.40e-17 | 71.1% | 9.9% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8d8lF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.51 | 38.0 | 3.51e-01 | 78.4% | 92.7% |
| 1mkfA02 | 2.60.40.1340 | Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like | 0.50 | 37.0 | 3.08e-01 | 77.3% | 46.5% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.50 | 35.0 | 3.42e-01 | 71.1% | 96.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3712272 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.58 | 36.0 | 3.23e-01 | 82.5% | 42.7% |
| 4098517 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.57 | 46.0 | 3.60e-01 | 87.6% | 73.5% |
| 3924066 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.55 | 29.0 | 2.80e-01 | 80.4% | 40.0% |
| 3037417 | 304.158.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Csy2 | 0.55 | 47.0 | 3.54e-01 | 94.8% | 93.1% |
| 3398840 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 34.0 | 3.35e-01 | 80.4% | 60.0% |
| 3228408 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.52 | 41.0 | 3.45e-01 | 86.6% | 57.1% |
| 3688941 | 11.1.1.643 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 | 0.52 | 33.0 | 3.32e-01 | 81.4% | 64.2% |
| 3461676 | 10.32.1.212 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind | 0.50 | 33.0 | 2.63e-01 | 80.4% | 31.5% |
| 5038655 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 30.0 | 3.29e-01 | 80.4% | 72.5% |