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apoptosis_inhibitor

Euk-Vir

Spodoptera_littoralis_nucleopolyhedrovirus

apoptosis_inhibitor__YP_009505867__Spodoptera_littoralis_nucleopolyhedrovirus__10456

Identity

Accession:
YP_009505867 ↗
Protein ID:
apoptosis_inhibitor
Kingdom:
euk

Quality

74.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_littoralis_nucleopolyhedrovirus

TaxID: 10456

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-52
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mekA02 6.10.140.2220 Special › Helix non-globular › Helix Hairpins › 0.66 50.0 4.78e-01 100.0% 71.4%
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 42.0 4.30e-01 73.0% 76.5%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 49.0 4.07e-01 100.0% 60.6%
2iw2A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.57 46.0 3.07e-01 100.0% 86.7%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.56 45.0 3.23e-01 97.3% 75.4%
2uv8A05 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 42.0 2.39e-01 97.3% 65.5%
3hcsA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 40.0 3.67e-01 81.1% 90.4%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.55 38.0 3.10e-01 97.3% 37.5%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 39.0 2.45e-01 78.4% 53.9%
2vrdA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 38.0 3.37e-01 73.0% 44.3%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.55 39.0 2.63e-01 83.8% 63.2%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 44.0 3.40e-01 100.0% 36.4%
3u21A00 1.10.10.2430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain 0.55 32.0 2.34e-01 100.0% 16.5%
5tdrA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 43.0 3.61e-01 94.6% 65.7%
5j83B01 3.50.30.80 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › IlvD/EDD C-terminal domain-like 0.54 43.0 2.88e-01 100.0% 21.1%
2hoxA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 38.0 2.80e-01 78.4% 89.4%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 2.63e-01 94.6% 40.1%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 42.0 3.90e-01 94.6% 90.4%
5tabA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 41.0 3.82e-01 94.6% 86.8%
1s5jA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 40.0 2.70e-01 100.0% 74.7%
7sf8A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 36.0 2.20e-01 100.0% 8.3%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 37.0 3.22e-01 75.7% 78.9%
4gczB03 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 36.0 2.49e-01 78.4% 34.8%
2g5xA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.50 37.0 2.62e-01 100.0% 99.4%
2nyfA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.50 35.0 2.25e-01 97.3% 21.3%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621229 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.67 47.0 3.91e-01 75.7% 40.0%
3348160 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 43.0 4.01e-01 73.0% 54.2%
3651174 221.1.1.172 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_UBP8 0.64 38.0 3.34e-01 100.0% 34.5%
3860380 386.1.1.269 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CCHC_BCL-11A 0.63 44.0 4.73e-01 75.7% 96.7%
3522814 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 44.0 3.72e-01 75.7% 47.7%
3410422 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 43.0 4.39e-01 75.7% 77.1%
3913579 386.1.1.279 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27065 0.62 44.0 3.98e-01 78.4% 52.7%
3506309 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.61 43.0 4.40e-01 83.8% 85.7%
4976002 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 48.0 4.80e-01 97.3% 100.0%
4992194 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.60 42.0 3.31e-01 78.4% 92.2%
5055672 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.59 44.0 3.26e-01 83.8% 71.4%
4944118 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 3.82e-01 81.1% 66.0%
3246228 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 47.0 4.42e-01 100.0% 78.0%
4021522 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 47.0 4.38e-01 100.0% 84.0%
5041606 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 43.0 3.71e-01 86.5% 89.2%
3551331 633.29.1.8 ↗ alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 › WAC_Acf1_DNA_bd 0.57 44.0 3.53e-01 94.6% 41.2%
3780096 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.57 43.0 3.73e-01 86.5% 52.3%
3492870 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 42.0 3.95e-01 100.0% 83.6%
3994024 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 42.0 3.66e-01 94.6% 51.4%
3537277 3141.1.1.0 ↗ few secondary structure elements › SCA7 zinc finger domain › SCA7 zinc finger domain › SCA7 zinc finger domain 0.56 38.0 3.93e-01 83.8% 90.0%
3329244 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 44.0 3.95e-01 100.0% 93.3%
4929397 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.54 45.0 3.17e-01 100.0% 67.7%
314827 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 43.0 2.44e-01 94.6% 22.1%
3499766 3914.1.1.0 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain 0.53 38.0 2.07e-01 83.8% 12.4%
5071089 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.33e-01 70.3% 60.0%
3245696 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.51 37.0 2.26e-01 78.4% 16.7%
D2 medium residues 87-132
PDB
Domain cluster: rep: IAP_c__YP_009116756__Tipula_oleracea_nudivirus__1546257__D239-297
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13920.13 best zf-C3HC4_3 41.6 1.20e-10 95.7% 91.8%