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arginyl-tRNA_synthetase
Euk-VirAcanthamoeba_polyphaga_mimivirus
arginyl-tRNA_synthetase__YP_003987185__Acanthamoeba_polyphaga_mimivirus__212035
Identity
- Accession:
- YP_003987185 ↗
- Protein ID:
- arginyl-tRNA_synthetase
- Kingdom:
- euk
Quality
63.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Mimivirus›
Acanthamoeba_polyphaga_mimivirus
TaxID: 212035
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-114
D2
medium
residues 115-182_469-600
D3
medium
residues 183-280
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00750.26 best | tRNA-synt_1d | 77.6 | 1.20e-21 | 99.0% | 27.8% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iq0A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.77 | 69.0 | 4.56e-01 | 100.0% | 25.5% |
| 3e7qA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 52.0 | 4.03e-01 | 81.6% | 46.6% |
| 4s3mB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.65 | 39.0 | 3.80e-01 | 98.0% | 54.7% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 36.0 | 4.06e-01 | 70.4% | 76.1% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 47.0 | 4.12e-01 | 82.7% | 59.1% |
| 3jsjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 45.0 | 3.71e-01 | 81.6% | 69.4% |
| 2ov8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 3.76e-01 | 81.6% | 92.3% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 36.0 | 3.17e-01 | 99.0% | 49.6% |
| 6f7hA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.52 | 38.0 | 2.90e-01 | 78.6% | 85.7% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 36.0 | 2.96e-01 | 71.4% | 69.9% |
| 3t5tA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 38.0 | 3.08e-01 | 78.6% | 47.9% |
| 3okpA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 38.0 | 3.11e-01 | 80.6% | 98.9% |
| 1jkvA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 41.0 | 3.23e-01 | 85.7% | 85.3% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 34.0 | 3.77e-01 | 96.9% | 86.1% |
| 2r7hB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 36.0 | 3.06e-01 | 74.5% | 100.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.95 | 91.0 | 6.32e-01 | 100.0% | 38.5% | |
| 4232630 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.95 | 91.0 | 6.21e-01 | 100.0% | 39.7% |
| 3920705 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.94 | 76.0 | 5.36e-01 | 100.0% | 31.5% |
| 4383749 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.94 | 90.0 | 6.04e-01 | 100.0% | 41.3% |
| 4101712 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.94 | 90.0 | 5.78e-01 | 100.0% | 26.9% |
| None | — | 0.92 | 87.0 | 5.20e-01 | 100.0% | 17.3% | |
| 4025268 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.90 | 85.0 | 5.75e-01 | 100.0% | 35.3% |
| 5071019 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.90 | 86.0 | 6.00e-01 | 100.0% | 37.0% |
| 3606619 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.90 | 85.0 | 5.54e-01 | 100.0% | 27.9% |
| None | — | 0.90 | 85.0 | 5.11e-01 | 100.0% | 18.1% | |
| 4937843 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.90 | 85.0 | 5.52e-01 | 100.0% | 26.9% |
| 5029580 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.90 | 82.0 | 5.78e-01 | 100.0% | 35.2% |
| 4044047 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.89 | 85.0 | 5.09e-01 | 100.0% | 18.1% |
| None | — | 0.89 | 84.0 | 5.87e-01 | 100.0% | 36.8% | |
| 3362575 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.89 | 84.0 | 5.06e-01 | 100.0% | 18.2% |
| 4477974 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.89 | 84.0 | 5.88e-01 | 100.0% | 37.1% |
| 3595118 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.89 | 84.0 | 5.49e-01 | 100.0% | 28.3% |
| None | — | 0.89 | 84.0 | 5.02e-01 | 100.0% | 17.3% | |
| None | — | 0.89 | 84.0 | 5.05e-01 | 100.0% | 18.3% | |
| 4312902 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.88 | 83.0 | 4.98e-01 | 100.0% | 17.4% |
| 4020312 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 83.0 | 5.85e-01 | 100.0% | 37.4% |
| 4389484 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 82.0 | 5.72e-01 | 100.0% | 36.5% |
| 5048091 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 82.0 | 5.22e-01 | 100.0% | 24.0% |
| 5026068 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 81.0 | 5.93e-01 | 100.0% | 40.4% |
| 5028816 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.87 | 81.0 | 4.93e-01 | 100.0% | 18.8% |
| 4190615 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.87 | 82.0 | 5.70e-01 | 100.0% | 36.4% |
| 4249852 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.87 | 81.0 | 5.69e-01 | 100.0% | 38.9% |
| None | — | 0.86 | 80.0 | 5.70e-01 | 100.0% | 39.6% | |
| 4682878 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.86 | 80.0 | 4.85e-01 | 100.0% | 21.2% |
| 4178455 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.86 | 80.0 | 5.58e-01 | 100.0% | 37.2% |
| 4160226 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.85 | 80.0 | 5.40e-01 | 100.0% | 41.9% |
| 4119794 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.85 | 79.0 | 5.59e-01 | 100.0% | 37.8% |
| 4951822 | 2005.1.1.124 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DALR_1 | 0.84 | 78.0 | 4.73e-01 | 100.0% | 18.4% |
| None | — | 0.84 | 78.0 | 5.64e-01 | 100.0% | 40.0% | |
| 4342055 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.83 | 77.0 | 4.71e-01 | 100.0% | 17.9% |
| 4947622 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.58 | 40.0 | 3.66e-01 | 72.4% | 70.4% |
| 4971640 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 44.0 | 3.07e-01 | 100.0% | 59.2% |
| 4107520 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.51 | 31.0 | 3.54e-01 | 76.5% | 80.0% |
| 3281737 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.50 | 34.0 | 3.12e-01 | 100.0% | 53.1% |
D4
medium
residues 281-395
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00750.26 best | tRNA-synt_1d | 110.3 | 1.40e-31 | 100.0% | 33.8% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jldA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.89 | 79.0 | 6.04e-01 | 93.0% | 45.4% |
| 3fnrA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.84 | 76.0 | 5.42e-01 | 95.7% | 36.2% |
| 1f7uA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.84 | 78.0 | 5.40e-01 | 99.1% | 34.0% |
| 1nzjA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.81 | 69.0 | 6.44e-01 | 88.7% | 100.0% |
| 3zokA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 37.0 | 3.26e-01 | 96.5% | 40.2% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.61 | 37.0 | 3.59e-01 | 95.7% | 52.3% |
| 1pzxA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.59 | 40.0 | 4.01e-01 | 94.8% | 66.4% |
| 3tmgA02 | 3.40.190.100 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Glycine betaine-binding periplasmic protein; domain 2 | 0.59 | 32.0 | 3.28e-01 | 93.0% | 53.2% |
| 3lybC00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.58 | 47.0 | 4.53e-01 | 93.9% | 76.1% |
| 4efaE02 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.55 | 36.0 | 3.53e-01 | 92.2% | 59.7% |
| 5supC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 45.0 | 3.68e-01 | 89.6% | 73.7% |
| 2g29A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 32.0 | 3.11e-01 | 94.8% | 50.8% |
| 1j09A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 37.0 | 3.69e-01 | 96.5% | 68.6% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 38.0 | 3.28e-01 | 76.5% | 58.4% |
| 2pbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 43.0 | 3.62e-01 | 94.8% | 91.7% |
| 2hoeA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 44.0 | 4.03e-01 | 93.0% | 77.2% |
ECOD (78)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3881538 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.95 | 88.0 | 6.80e-01 | 95.7% | 50.9% |
| 3362575 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.93 | 86.0 | 5.27e-01 | 95.7% | 20.4% |
| 3606619 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.92 | 85.0 | 5.71e-01 | 95.7% | 60.5% |
| 3595118 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.92 | 82.0 | 5.53e-01 | 92.2% | 60.0% |
| None | — | 0.92 | 83.0 | 6.02e-01 | 93.9% | 42.2% | |
| None | — | 0.91 | 86.0 | 6.19e-01 | 98.3% | 43.9% | |
| 4389484 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.91 | 82.0 | 5.95e-01 | 94.8% | 40.7% |
| 4942997 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.91 | 81.0 | 5.90e-01 | 93.0% | 39.3% |
| 4101712 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.91 | 83.0 | 5.57e-01 | 95.7% | 31.2% |
| 4492394 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.90 | 83.0 | 5.99e-01 | 95.7% | 40.4% |
| 5000393 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.90 | 83.0 | 5.88e-01 | 96.5% | 45.2% |
| 3270651 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.90 | 85.0 | 5.93e-01 | 98.3% | 39.4% |
| 5071019 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.90 | 84.0 | 6.12e-01 | 97.4% | 43.7% |
| None | — | 0.90 | 84.0 | 5.14e-01 | 98.3% | 21.2% | |
| 4325434 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.90 | 82.0 | 5.06e-01 | 95.7% | 20.1% |
| 4312902 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.90 | 84.0 | 5.13e-01 | 98.3% | 21.2% |
| None | — | 0.89 | 84.0 | 5.13e-01 | 98.3% | 21.2% | |
| 3932457 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.89 | 83.0 | 5.96e-01 | 97.4% | 39.0% |
| 3789788 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.89 | 82.0 | 5.50e-01 | 96.5% | 29.4% |
| 4682878 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.89 | 82.0 | 5.06e-01 | 96.5% | 20.7% |
| 5026068 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.89 | 76.0 | 5.73e-01 | 93.9% | 42.1% |
| 3920705 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.89 | 82.0 | 6.08e-01 | 96.5% | 44.2% |
| 3790093 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.89 | 82.0 | 5.22e-01 | 97.4% | 23.3% |
| 3470611 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.89 | 82.0 | 5.71e-01 | 97.4% | 42.7% |
| 4190615 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.89 | 81.0 | 5.91e-01 | 96.5% | 40.0% |
| None | — | 0.89 | 82.0 | 5.06e-01 | 97.4% | 21.0% | |
| 4112234 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.88 | 80.0 | 5.38e-01 | 94.8% | 30.1% |
| 4303833 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 80.0 | 5.81e-01 | 95.7% | 40.0% |
| 4025268 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 80.0 | 5.63e-01 | 95.7% | 49.7% |
| 5079154 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 81.0 | 5.54e-01 | 96.5% | 42.3% |
| None | — | 0.88 | 82.0 | 5.09e-01 | 98.3% | 20.8% | |
| 4044047 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.88 | 82.0 | 5.07e-01 | 98.3% | 21.0% |
| 4467915 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 80.0 | 5.94e-01 | 95.7% | 45.0% |
| 4020312 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 77.0 | 5.67e-01 | 92.2% | 43.0% |
| None | — | 0.88 | 80.0 | 5.14e-01 | 95.7% | 24.8% | |
| 3730592 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 79.0 | 5.61e-01 | 94.8% | 37.7% |
| 4232630 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.88 | 81.0 | 5.83e-01 | 97.4% | 42.1% |
| None | — | 0.88 | 80.0 | 4.94e-01 | 95.7% | 20.5% | |
| 4246521 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.87 | 77.0 | 5.63e-01 | 93.9% | 38.2% |
| None | — | 0.87 | 79.0 | 5.11e-01 | 95.7% | 25.1% | |
| None | — | 0.87 | 79.0 | 4.90e-01 | 95.7% | 20.3% | |
| 4937843 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.87 | 82.0 | 5.54e-01 | 100.0% | 30.9% |
| 4971097 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.87 | 80.0 | 5.62e-01 | 97.4% | 43.4% |
| 4383749 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.86 | 82.0 | 5.79e-01 | 100.0% | 43.5% |
| 5028816 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.86 | 78.0 | 4.89e-01 | 96.5% | 20.4% |
| 4071450 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.86 | 79.0 | 4.80e-01 | 97.4% | 22.1% |
| 4593208 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.86 | 78.0 | 5.46e-01 | 95.7% | 35.3% |
| 4477974 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.86 | 78.0 | 5.78e-01 | 97.4% | 42.5% |
| 4421947 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.86 | 77.0 | 4.75e-01 | 95.7% | 19.3% |
| 3403644 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.86 | 78.0 | 5.86e-01 | 96.5% | 43.9% |
| 4141551 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.86 | 79.0 | 4.83e-01 | 97.4% | 19.7% |
| 4156893 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.86 | 77.0 | 5.52e-01 | 95.7% | 38.0% |
| None | — | 0.85 | 77.0 | 4.82e-01 | 95.7% | 20.2% | |
| None | — | 0.85 | 75.0 | 5.69e-01 | 93.9% | 42.8% | |
| 4238915 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.85 | 77.0 | 5.63e-01 | 95.7% | 39.6% |
| None | — | 0.85 | 75.0 | 5.59e-01 | 93.9% | 43.3% | |
| 4324089 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.85 | 78.0 | 4.86e-01 | 98.3% | 20.3% |
| 4020807 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.85 | 79.0 | 5.69e-01 | 99.1% | 40.0% |
| 4042779 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.85 | 78.0 | 5.64e-01 | 97.4% | 45.9% |
| 4430167 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.84 | 76.0 | 5.76e-01 | 95.7% | 44.8% |
| 4178455 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.84 | 77.0 | 5.63e-01 | 97.4% | 43.9% |
| 4249852 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.84 | 76.0 | 5.62e-01 | 96.5% | 43.6% |
| 4967648 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.84 | 77.0 | 5.69e-01 | 97.4% | 41.5% |
| 4945527 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.84 | 76.0 | 5.40e-01 | 97.4% | 41.9% |
| None | — | 0.83 | 76.0 | 4.86e-01 | 97.4% | 25.3% | |
| 4119794 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.83 | 77.0 | 5.66e-01 | 98.3% | 42.6% |
| 4088605 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.82 | 73.0 | 5.41e-01 | 95.7% | 40.7% |
| None | — | 0.82 | 73.0 | 5.30e-01 | 95.7% | 43.7% | |
| 4051973 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.81 | 70.0 | 4.41e-01 | 95.7% | 19.3% |
| 4014799 | 2007.1.7.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes | 0.69 | 41.0 | 3.60e-01 | 95.7% | 40.6% |
| 4038287 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.63 | 37.0 | 3.53e-01 | 94.8% | 48.9% |
| 4964957 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 38.0 | 3.90e-01 | 94.8% | 60.9% |
| 3613854 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 42.0 | 3.26e-01 | 71.3% | 83.1% |
| 4067776 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.60 | 36.0 | 3.37e-01 | 94.8% | 46.9% |
| 4084221 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.59 | 39.0 | 3.72e-01 | 100.0% | 55.7% |
| 3977939 | 2004.1.1.193 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_19 | 0.55 | 45.0 | 3.53e-01 | 87.8% | 75.0% |
| 5030937 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 46.0 | 3.46e-01 | 95.7% | 60.3% |
| 3596631 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 40.0 | 3.62e-01 | 93.0% | 58.7% |
D5
medium
residues 396-468