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arginyl-tRNA_synthetase

Euk-Vir

Acanthamoeba_polyphaga_moumouvirus

arginyl-tRNA_synthetase__YP_007354682__Acanthamoeba_polyphaga_moumouvirus__1269028

Identity

Accession:: YP_007354682 ↗
Protein ID:: arginyl-tRNA_synthetase
Kingdom:: euk

Quality

69.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Moumouvirus› Acanthamoeba_polyphaga_moumouvirus

TaxID: 1269028

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-73

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00750.26 best	tRNA-synt_1d	95.2	5.80e-27	100.0%	21.2%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qvwB05	1.10.1740.150	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A ›	0.62	42.0	4.16e-01	71.4%	80.3%
3t0yA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.61	42.0	4.32e-01	71.4%	87.9%
2wdqC00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.58	40.0	3.34e-01	71.4%	86.0%
3bhqA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	40.0	2.92e-01	75.7%	35.6%
6fakA02	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.53	36.0	3.47e-01	70.0%	88.9%
3mk7B02	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.53	38.0	3.01e-01	78.6%	34.6%
1b5lA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.51	38.0	2.98e-01	80.0%	78.3%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3601983	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.59	40.0	3.47e-01	70.0%	64.8%
3406422	592.2.1.9 ↗	alpha arrays › PWI domain-like › YugE-like › YugE-like › PP1_inhibitor	0.57	38.0	3.56e-01	75.7%	56.0%
5067157	103.5.1.0 ↗	alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like	0.56	38.0	4.27e-01	74.3%	90.9%
3646025	632.22.1.67 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF842	0.56	41.0	3.30e-01	77.1%	97.0%
4096686	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.54	37.0	3.53e-01	72.9%	90.6%
3772121	632.7.1.19 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › MYO6_lever	0.53	36.0	3.33e-01	70.0%	82.2%
5078788	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.53	45.0	4.26e-01	100.0%	97.8%
3320417	6155.1.1.0 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter	0.53	45.0	3.91e-01	100.0%	100.0%
3416951	5000.3.1.1 ↗	alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2	0.52	36.0	2.74e-01	74.3%	69.0%
3407959	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	45.0	3.69e-01	100.0%	97.8%
3575378	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.50	35.0	3.23e-01	92.9%	54.7%