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attachment_protein

Euk-Vir

Alston_virus

attachment_protein__YP_010087174__Alston_virus__2495433

Identity

Accession:
YP_010087174 ↗
Protein ID:
attachment_protein
Kingdom:
euk

Quality

85.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 161-297_355-379_520-565
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00423.27 best HN 163.0 1.40e-47 69.7% 26.4%
PF00423.27 HN 33.2 3.10e-08 21.6% 7.5%
D2 medium residues 298-354_380-463
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00423.27 best HN 94.0 1.10e-26 60.3% 14.4%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.99 98.0 6.48e-01 100.0% 37.4%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.91 89.0 5.94e-01 100.0% 36.3%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.82 79.0 5.36e-01 100.0% 34.8%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.79 76.0 5.21e-01 100.0% 35.0%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.73 69.0 4.79e-01 100.0% 36.6%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 28.0 3.87e-01 82.3% 100.0%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.57 34.0 4.04e-01 80.1% 88.0%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 25.0 3.25e-01 76.6% 73.3%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.90e-01 100.0% 30.9%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 31.0 3.79e-01 83.7% 97.6%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 47.0 3.35e-01 100.0% 35.0%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 4.13e-01 81.6% 98.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1563144 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.99 98.0 6.33e-01 100.0% 33.7%
152420 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.91 88.0 5.79e-01 100.0% 33.3%
1112626 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.82 79.0 5.33e-01 100.0% 34.3%
4889672 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.81 78.0 5.30e-01 100.0% 34.5%
2527935 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.73 69.0 4.77e-01 100.0% 35.6%
3269700 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.71 37.0 2.83e-01 95.0% 23.4%
3062082 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.68 64.0 4.40e-01 100.0% 34.9%
3805053 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.58 39.0 3.02e-01 100.0% 32.2%
3290541 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.58 28.0 3.97e-01 80.1% 100.0%
4888729 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.55 35.0 3.92e-01 93.6% 84.0%
3227200 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.54 41.0 3.81e-01 83.0% 62.9%
4049494 5.1.2.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_62 0.54 38.0 2.92e-01 100.0% 32.7%
3738504 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 28.0 3.14e-01 93.6% 63.6%
4389579 5.1.4.100 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.53 41.0 2.83e-01 100.0% 24.5%
4938029 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.52 33.0 3.79e-01 70.9% 88.8%
5075528 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.52 31.0 3.72e-01 81.6% 91.1%
3937269 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.52 29.0 2.67e-01 95.7% 40.5%
3459291 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.51 37.0 2.86e-01 98.6% 32.6%
D3 medium residues 464-519
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00423.27 best HN 27.2 1.90e-06 100.0% 8.4%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 1.00 97.0 5.48e-01 100.0% 12.6%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.93 76.0 4.39e-01 100.0% 11.6%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.92 75.0 4.30e-01 100.0% 11.1%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.85 69.0 4.01e-01 100.0% 11.7%
1t6cA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.65 40.0 2.80e-01 96.4% 18.8%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.64 53.0 3.97e-01 91.1% 51.4%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.64 50.0 4.56e-01 96.4% 62.8%
3nuwA01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.63 43.0 3.70e-01 83.9% 44.4%
3mdqA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.62 41.0 2.82e-01 85.7% 20.1%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.62 43.0 3.83e-01 96.4% 50.0%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.60 48.0 3.59e-01 96.4% 32.7%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 47.0 2.88e-01 100.0% 13.8%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.59 48.0 4.10e-01 94.6% 63.3%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 4.06e-01 92.9% 71.0%
3c8iA00 2.40.410.10 Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily 0.57 43.0 3.44e-01 87.5% 99.2%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 49.0 3.06e-01 100.0% 24.1%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.56 46.0 3.18e-01 96.4% 81.2%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 37.0 2.90e-01 71.4% 75.2%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 2.88e-01 100.0% 15.7%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.09e-01 92.9% 30.6%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 2.80e-01 87.5% 24.2%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 44.0 3.25e-01 94.6% 34.3%
2hb5A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 3.07e-01 85.7% 88.7%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.66e-01 91.1% 27.1%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.47e-01 87.5% 55.7%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.43e-01 100.0% 84.6%
2e5aA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 45.0 3.84e-01 100.0% 88.2%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 36.0 2.57e-01 92.9% 21.8%
4h61A00 3.10.450.580 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 0.51 43.0 3.29e-01 96.4% 62.8%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.51 36.0 3.64e-01 76.8% 81.4%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 44.0 3.25e-01 100.0% 35.4%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 37.0 2.84e-01 92.9% 30.9%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 38.0 2.67e-01 94.6% 23.1%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 43.0 3.14e-01 100.0% 89.1%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.44e-01 92.9% 55.6%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4889672 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.96 79.0 4.50e-01 100.0% 11.0%
2833528 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.93 75.0 4.27e-01 100.0% 9.9%
5003966 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.73 55.0 5.25e-01 94.6% 69.2%
4978676 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.66 56.0 4.93e-01 92.9% 66.3%
3879945 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 40.0 3.91e-01 75.0% 55.0%
4138644 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.65 49.0 3.23e-01 94.6% 19.6%
3570251 5.1.4.288 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.63 52.0 3.08e-01 100.0% 11.7%
3258445 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.62 43.0 4.68e-01 91.1% 91.1%
3266526 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.61 43.0 3.23e-01 91.1% 29.5%
2983803 883.1.1.4 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Clostridium_P47 0.61 51.0 3.45e-01 98.2% 41.9%
3599742 5.1.5.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FG-GAP_3 0.60 53.0 3.14e-01 100.0% 13.7%
3997948 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 46.0 3.36e-01 100.0% 30.3%
3993869 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.60 47.0 3.26e-01 92.9% 25.1%
4888666 243.5.1.4 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AGAO-like_N2 0.59 50.0 4.20e-01 94.6% 55.2%
3963566 4056.1.1.5 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P22_portal 0.59 50.0 3.77e-01 100.0% 57.7%
5046300 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 50.0 4.33e-01 94.6% 69.4%
134234 809.1.1.2 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › BLIP 0.58 46.0 4.13e-01 100.0% 61.4%
3432857 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.58 49.0 3.70e-01 94.6% 39.3%
3916127 233.1.1.0 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.57 47.0 3.36e-01 94.6% 67.2%
3622366 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 43.0 4.50e-01 94.6% 96.0%
3415353 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.56 43.0 2.69e-01 94.6% 14.2%
5009292 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 39.0 2.62e-01 94.6% 17.9%
3600727 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 41.0 2.59e-01 94.6% 13.5%
3935989 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 40.0 2.55e-01 92.9% 12.7%
3395408 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 39.0 3.20e-01 83.9% 39.1%
3435691 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 38.0 3.69e-01 96.4% 66.2%
3741704 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.54 39.0 3.04e-01 94.6% 33.8%
4992208 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 36.0 2.41e-01 98.2% 16.0%
3303238 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.53 43.0 3.42e-01 91.1% 45.0%
3954760 1001.1.1.1 a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.53 38.0 3.81e-01 87.5% 73.3%
4982423 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 41.0 2.71e-01 92.9% 19.2%
3290202 1001.1.1.1 a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.53 38.0 3.81e-01 87.5% 73.3%
3254674 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.53 42.0 2.66e-01 96.4% 16.6%
3277546 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.53 44.0 3.46e-01 92.9% 53.3%
5009465 244.3.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.53 43.0 3.52e-01 92.9% 47.3%
3978756 3197.1.1.1 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.53 38.0 3.08e-01 94.6% 37.5%
3791220 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.52 42.0 3.36e-01 94.6% 50.0%
3390746 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.52 34.0 2.51e-01 100.0% 20.5%
3658033 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 42.0 3.11e-01 94.6% 68.5%
3509053 216.1.1.17 a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C 0.52 44.0 3.45e-01 100.0% 78.5%
3684014 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.52 43.0 3.33e-01 94.6% 41.5%
4363296 330.11.1.1 a+b two layers › dsRBD-like › Anti-lipopolysaccharide factor (ALF) › Anti-lipopolysaccharide factor (ALF) › Anti-LPS-SCYG 0.51 39.0 3.27e-01 92.9% 47.0%
4945498 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.51 42.0 3.46e-01 92.9% 78.1%
3494433 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 36.0 2.93e-01 87.5% 36.3%
4854150 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.50 39.0 3.78e-01 87.5% 76.6%