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bZIP_transcription_factor

Euk-Vir

Phascolarctid_gammaherpesvirus_1

bZIP_transcription_factor__YP_010087491__Phascolarctid_gammaherpesvirus_1__2249313

Identity

Accession:
YP_010087491 ↗
Protein ID:
bZIP_transcription_factor
Kingdom:
euk

Quality

57.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-38_52-74
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kbtA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 51.0 3.24e-01 91.8% 30.6%
3fkeA01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.57 39.0 3.79e-01 80.3% 63.4%
D2 medium residues 39-51_75-172
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03326.19 best Herpes_TAF50 63.0 3.60e-17 91.9% 17.6%
D3 medium residues 232-286
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.80 59.0 5.28e-01 78.2% 72.0%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.79 58.0 4.45e-01 80.0% 36.8%
1dj2A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.79 60.0 4.96e-01 83.6% 46.5%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.78 68.0 4.50e-01 98.2% 40.1%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.76 53.0 4.34e-01 72.7% 49.5%
1rypD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.75 64.0 4.17e-01 96.4% 41.9%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.75 61.0 5.07e-01 100.0% 51.0%
1l3eB00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.74 51.0 4.19e-01 76.4% 39.6%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.74 62.0 4.18e-01 96.4% 45.2%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.74 58.0 6.02e-01 92.7% 90.4%
5fmnA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.74 57.0 4.89e-01 85.5% 53.5%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 49.0 4.96e-01 83.6% 70.4%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.73 62.0 4.05e-01 96.4% 42.0%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.72 61.0 5.26e-01 92.7% 64.7%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.72 61.0 3.89e-01 92.7% 21.0%
3unbF00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.72 60.0 3.96e-01 96.4% 41.8%
4p5aC00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.72 50.0 3.31e-01 72.7% 17.9%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.72 57.0 5.55e-01 89.1% 86.7%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.72 59.0 4.00e-01 94.5% 47.2%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 48.0 3.84e-01 70.9% 45.3%
4uqfG01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.71 54.0 5.60e-01 89.1% 90.4%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.70 59.0 4.62e-01 92.7% 74.1%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.70 62.0 4.26e-01 100.0% 58.6%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 56.0 5.44e-01 87.3% 83.6%
4wv4B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.70 54.0 4.57e-01 90.9% 50.5%
3cm0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 50.0 3.56e-01 81.8% 23.9%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.69 57.0 4.85e-01 90.9% 59.8%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 50.0 4.68e-01 76.4% 64.6%
2vy1A00 1.10.4180.10 Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY 0.68 58.0 4.13e-01 94.5% 38.7%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 46.0 3.43e-01 74.5% 27.9%
1rfyB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.67 54.0 4.56e-01 87.3% 68.2%
1npyA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 50.0 3.60e-01 83.6% 45.0%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.66 49.0 5.23e-01 85.5% 97.8%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 57.0 3.44e-01 98.2% 42.4%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 54.0 4.06e-01 94.5% 36.1%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.64 44.0 4.75e-01 80.0% 85.1%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.62 39.0 4.09e-01 80.0% 72.9%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.62 53.0 4.96e-01 92.7% 83.1%
7d1tA01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.60 53.0 3.69e-01 100.0% 41.2%
2fh5A01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 53.0 4.13e-01 100.0% 46.7%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 53.0 4.22e-01 100.0% 57.1%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.60 43.0 3.41e-01 96.4% 32.9%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 47.0 4.58e-01 89.1% 80.6%
2qbyA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 49.0 4.14e-01 100.0% 81.6%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 50.0 4.44e-01 94.5% 67.1%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.56 47.0 3.49e-01 98.2% 57.6%
4impA01 6.10.140.1830 Special › Helix non-globular › Helix Hairpins › 0.54 44.0 4.46e-01 96.4% 96.2%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.53 44.0 3.33e-01 96.4% 49.0%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.51 43.0 4.34e-01 96.4% 94.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3174920 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.87 70.0 5.93e-01 90.9% 55.3%
3420489 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.85 74.0 6.88e-01 100.0% 77.1%
4602458 4082.1.1.5 alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › PF27473 0.83 75.0 5.82e-01 100.0% 55.7%
3512559 192.1.1.37 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.82 71.0 6.80e-01 98.2% 90.8%
3831185 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.81 72.0 6.66e-01 100.0% 81.4%
4930913 3858.1.1.2 few secondary structure elements › Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit › Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit › Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit › Dimeth_Pyl 0.81 56.0 6.36e-01 78.2% 100.0%
3224502 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.81 51.0 5.10e-01 81.8% 63.6%
4069049 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.80 63.0 4.18e-01 87.3% 22.4%
3578694 192.5.1.2 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Tiam_CC_Ex 0.80 57.0 5.09e-01 74.5% 69.3%
3188573 5010.1.1.0 extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV 0.78 59.0 5.73e-01 80.0% 73.3%
4489833 6130.1.1.1 alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.78 62.0 5.80e-01 92.7% 70.0%
4994798 3646.1.1.0 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters 0.77 69.0 4.64e-01 100.0% 36.0%
3594129 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.76 55.0 3.61e-01 76.4% 82.3%
3982565 101.1.1.202 alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.76 49.0 4.98e-01 80.0% 67.3%
1247969 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.75 52.0 4.71e-01 94.5% 54.9%
3730753 7023.1.1.3 alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT_2 0.74 64.0 4.47e-01 92.7% 45.6%
4281883 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.74 61.0 4.69e-01 96.4% 41.5%
3638401 4095.1.1.1 alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.74 57.0 4.14e-01 85.5% 30.3%
3436965 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.74 64.0 5.32e-01 96.4% 55.8%
3367867 192.1.1.18 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › Transposase_24 0.74 64.0 5.24e-01 94.5% 90.5%
3984312 101.1.1.202 alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.73 49.0 4.31e-01 81.8% 47.5%
3740452 148.1.1.4 alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.73 59.0 5.39e-01 100.0% 67.1%
5034253 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.72 62.0 4.24e-01 94.5% 39.5%
3183687 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.72 59.0 5.39e-01 100.0% 67.1%
4982483 2486.1.1.0 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.72 64.0 3.67e-01 100.0% 22.4%
5071140 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.72 58.0 4.27e-01 89.1% 35.3%
5027571 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.72 61.0 3.50e-01 94.5% 14.3%
4016091 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 64.0 5.51e-01 100.0% 100.0%
4205244 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.71 46.0 4.15e-01 70.9% 48.0%
3807996 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.70 59.0 5.60e-01 94.5% 80.0%
3679762 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 59.0 3.27e-01 98.2% 14.4%
3378446 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 60.0 3.79e-01 100.0% 34.0%
4018473 5043.2.1.0 extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain 0.68 60.0 4.39e-01 100.0% 47.3%
3510767 3343.1.1.2 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.68 56.0 3.19e-01 90.9% 35.9%
3972992 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 50.0 4.77e-01 80.0% 75.4%
3615231 2006.1.4.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.67 57.0 3.74e-01 98.2% 36.9%
3469373 109.4.1.1660 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27570 0.66 55.0 3.24e-01 89.1% 15.6%
5012326 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 48.0 3.26e-01 83.6% 56.0%