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baculovirus_repeated_namegeneORF
Euk-VirCondylorrhiza_vestigialis_MNPV
baculovirus_repeated_namegeneORF__YP_009118527__Condylorrhiza_vestigialis_MNPV__1592576
Identity
- Accession:
- YP_009118527 ↗
- Protein ID:
- baculovirus_repeated_namegeneORF
- Kingdom:
- euk
Quality
80.2
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Condylorrhiza_vestigialis_mutiple_nucleopolyhedrovirus
TaxID: 1592576
Cluster
View cluster (47 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 234-339
Domain cluster:
rep: BV_ODV-E26__YP_009666490__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D138-232
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12299.14 best | DUF3627 | 51.1 | 1.70e-13 | 71.7% | 78.5% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oq2A00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 38.0 | 3.91e-01 | 83.0% | 62.6% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.62 | 34.0 | 4.16e-01 | 91.5% | 84.8% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.60 | 44.0 | 4.64e-01 | 93.4% | 87.2% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.58 | 40.0 | 4.53e-01 | 93.4% | 96.2% |
| 4py9A02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.58 | 40.0 | 3.79e-01 | 91.5% | 59.5% |
| 3ui3A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 39.0 | 4.05e-01 | 83.0% | 75.5% |
| 1oltA02 | 1.10.10.920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 40.0 | 4.44e-01 | 92.5% | 98.8% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 35.0 | 3.98e-01 | 79.2% | 85.9% |
| 2j01100 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.54 | 29.0 | 3.14e-01 | 87.7% | 59.1% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.54 | 34.0 | 3.99e-01 | 96.2% | 90.8% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 32.0 | 3.74e-01 | 71.7% | 86.3% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 4.02e-01 | 95.3% | 87.8% |
| 4anjA06 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 37.0 | 3.68e-01 | 79.2% | 70.8% |
| 5optn00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.66e-01 | 77.4% | 80.6% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.51 | 30.0 | 3.52e-01 | 81.1% | 88.6% |
| 6ui4A03 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 35.0 | 3.85e-01 | 82.1% | 89.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4971513 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.67 | 39.0 | 4.67e-01 | 78.3% | 88.6% |
| 3946107 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.66 | 53.0 | 5.52e-01 | 85.8% | 100.0% |
| 3560945 | 11.1.6.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain | 0.63 | 53.0 | 4.68e-01 | 90.6% | 89.0% |
| 3208110 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 42.0 | 4.17e-01 | 90.6% | 64.3% |
| 4632150 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.62 | 39.0 | 4.14e-01 | 81.1% | 70.5% |
| 2427641 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 43.0 | 4.14e-01 | 84.0% | 61.8% |
| 4031720 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.61 | 37.0 | 4.00e-01 | 84.0% | 70.0% |
| 5069719 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.61 | 43.0 | 4.73e-01 | 96.2% | 90.6% |
| 4931742 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.61 | 43.0 | 4.86e-01 | 86.8% | 97.5% |
| 4965698 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.61 | 37.0 | 4.17e-01 | 84.0% | 80.0% |
| 3690887 | 101.1.9.87 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PF26118 | 0.61 | 32.0 | 3.96e-01 | 79.2% | 92.7% |
| 3184173 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.60 | 42.0 | 3.65e-01 | 75.5% | 47.5% |
| 4942837 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.60 | 43.0 | 4.80e-01 | 82.1% | 97.5% |
| 4151900 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.60 | 37.0 | 3.32e-01 | 89.6% | 45.1% |
| 4992482 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.60 | 43.0 | 4.70e-01 | 86.8% | 92.9% |
| 4974123 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.59 | 49.0 | 5.02e-01 | 96.2% | 95.0% |
| 5049794 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.59 | 36.0 | 3.26e-01 | 90.6% | 45.5% |
| 3602246 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.58 | 41.0 | 4.53e-01 | 86.8% | 92.9% |
| 4969409 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.57 | 49.0 | 4.82e-01 | 94.3% | 90.4% |
| 3963144 | 3016.1.1.10 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P | 0.56 | 35.0 | 4.05e-01 | 89.6% | 92.9% |
| 4979429 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.56 | 41.0 | 4.48e-01 | 83.0% | 97.6% |
| 3397043 | 306.5.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP | 0.54 | 38.0 | 4.29e-01 | 94.3% | 98.8% |
| 4961035 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 32.0 | 3.64e-01 | 84.9% | 84.0% |
| 4997864 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 34.0 | 3.41e-01 | 88.7% | 63.3% |
| 5003653 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 33.0 | 3.55e-01 | 89.6% | 74.4% |
| 5054231 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 33.0 | 3.75e-01 | 77.4% | 90.7% |
| 4945430 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 36.0 | 3.77e-01 | 85.8% | 81.1% |
| 3016706 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.51 | 32.0 | 3.34e-01 | 76.4% | 65.7% |
| 3390907 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 34.0 | 3.69e-01 | 75.5% | 84.5% |
D2
medium
residues 2-139
Domain cluster:
rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02498.23 best | Bro-N | 89.5 | 2.50e-25 | 68.8% | 97.9% |
D3
medium
residues 143-232
Domain cluster:
rep: BRO-B__YP_008378440__Choristoneura_rosaceana_nucleopolyhedrovirus__58094__D133-214