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beta_protein
Euk-VirAdelaide_River_virus
beta_protein__YP_009177246__Adelaide_River_virus__31612
Identity
- Accession:
- YP_009177246 ↗
- Protein ID:
- beta_protein
- Kingdom:
- euk
Quality
68.8
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Ephemerovirus›
Adelaide_River_virus
TaxID: 31612
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-119
Domain cluster:
rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lg7A00 | 3.10.460.10 | Alpha Beta › Roll › VSV matrix protein › VSV matrix protein | 0.75 | 66.0 | 5.88e-01 | 100.0% | 67.7% |
| 2w2sA00 | 3.10.460.20 | Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 | 0.73 | 64.0 | 5.71e-01 | 100.0% | 68.7% |
| 1yocA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 35.0 | 3.31e-01 | 100.0% | 42.1% |
| 3qooA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 34.0 | 3.27e-01 | 100.0% | 45.5% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.62 | 35.0 | 3.39e-01 | 100.0% | 49.6% |
| 1t82A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 36.0 | 3.37e-01 | 100.0% | 47.2% |
| 2uuvB01 | 3.40.462.40 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix | 0.59 | 40.0 | 3.10e-01 | 93.2% | 30.0% |
| 4czwA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 44.0 | 3.07e-01 | 80.3% | 93.1% |
| 3fotA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.56 | 49.0 | 3.95e-01 | 99.1% | 84.5% |
| 7pwfD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.55 | 30.0 | 3.37e-01 | 98.3% | 67.4% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 39.0 | 4.08e-01 | 97.4% | 80.7% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 47.0 | 4.59e-01 | 100.0% | 89.1% |
| 4qzvB02 | 2.20.210.30 | Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › | 0.54 | 32.0 | 3.97e-01 | 100.0% | 100.0% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 38.0 | 4.20e-01 | 92.3% | 97.7% |
| 2f5gA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.53 | 41.0 | 4.05e-01 | 100.0% | 76.2% |
| 3w3sA01 | 3.30.70.1920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.83e-01 | 100.0% | 61.3% |
| 1lfwA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 4.56e-01 | 100.0% | 100.0% |
| 3rt0C00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 43.0 | 3.86e-01 | 91.5% | 86.0% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 4.24e-01 | 99.1% | 98.0% |
| 5e4bA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 43.0 | 3.88e-01 | 94.9% | 95.5% |
| 1p1lA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.84e-01 | 98.3% | 85.3% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.92e-01 | 99.1% | 85.6% |
| 1tz0B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 4.01e-01 | 99.1% | 93.8% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966642 | 845.1.1.2 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix | 0.75 | 69.0 | 5.83e-01 | 100.0% | 61.9% |
| 3243630 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.74 | 37.0 | 4.20e-01 | 100.0% | 63.3% |
| 184954 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.73 | 64.0 | 5.71e-01 | 100.0% | 68.7% |
| 3925462 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.70 | 37.0 | 4.07e-01 | 100.0% | 62.0% |
| 4170481 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.63 | 46.0 | 5.12e-01 | 100.0% | 100.0% |
| 5030229 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.62 | 46.0 | 5.06e-01 | 100.0% | 100.0% |
| 4150515 | 11.2.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_SHIP1-2_2nd | 0.60 | 55.0 | 5.10e-01 | 100.0% | 87.6% |
| 3395043 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.60 | 55.0 | 4.88e-01 | 100.0% | 93.9% |
| 3777373 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.60 | 53.0 | 5.29e-01 | 99.1% | 96.7% |
| 3923821 | 11.2.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2-C2_1 | 0.58 | 53.0 | 4.91e-01 | 100.0% | 88.0% |
| 3266246 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.58 | 53.0 | 5.09e-01 | 100.0% | 92.6% |
| 3740682 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.58 | 54.0 | 5.12e-01 | 100.0% | 90.4% |
| 3226534 | 11.2.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2-C2_1 | 0.58 | 53.0 | 4.96e-01 | 100.0% | 89.0% |
| 4015002 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.58 | 53.0 | 5.08e-01 | 100.0% | 91.1% |
| 3828031 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.58 | 53.0 | 4.65e-01 | 100.0% | 84.7% |
| 3526966 | 11.2.1.79 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › CTSRT | 0.58 | 52.0 | 4.87e-01 | 99.1% | 92.4% |
| 3415385 | 11.2.1.31 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4788 | 0.58 | 53.0 | 5.09e-01 | 100.0% | 96.3% |
| 3596070 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.58 | 53.0 | 4.76e-01 | 100.0% | 87.5% |
| 3712933 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.58 | 53.0 | 4.91e-01 | 100.0% | 91.7% |
| 3408375 | 11.2.1.31 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4788 | 0.57 | 53.0 | 4.97e-01 | 100.0% | 92.9% |
| 3631712 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.57 | 52.0 | 4.89e-01 | 100.0% | 85.5% |
| 3785825 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.57 | 52.0 | 4.87e-01 | 100.0% | 89.0% |
| 3260203 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 52.0 | 4.73e-01 | 100.0% | 96.8% |
| 3703177 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 50.0 | 4.97e-01 | 99.1% | 98.4% |
| 3390528 | 11.2.1.31 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4788 | 0.57 | 52.0 | 4.90e-01 | 100.0% | 92.9% |
| 3406219 | 11.2.1.31 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4788 | 0.57 | 52.0 | 4.96e-01 | 100.0% | 96.3% |
| 4062444 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.56 | 39.0 | 4.34e-01 | 94.0% | 97.6% |
| 3621194 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.56 | 50.0 | 4.92e-01 | 100.0% | 89.8% |
| 3782867 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.56 | 51.0 | 4.96e-01 | 100.0% | 98.5% |
| 3700926 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 50.0 | 4.43e-01 | 100.0% | 89.3% |
| 3789009 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.55 | 50.0 | 4.71e-01 | 100.0% | 87.9% |
| 3253550 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 49.0 | 4.69e-01 | 100.0% | 91.1% |
| 3740584 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 49.0 | 4.70e-01 | 100.0% | 91.1% |
| 3396073 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.54 | 48.0 | 4.40e-01 | 99.1% | 100.0% |
| 3406926 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.54 | 47.0 | 4.36e-01 | 98.3% | 99.4% |
| 4467707 | 304.116.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF | 0.53 | 43.0 | 4.48e-01 | 100.0% | 92.7% |
| 4954449 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.53 | 37.0 | 3.95e-01 | 88.0% | 85.9% |
| 3990294 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 30.0 | 3.56e-01 | 100.0% | 81.2% |
| 3467037 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.53 | 47.0 | 4.18e-01 | 100.0% | 82.4% |
| 4941817 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 42.0 | 4.33e-01 | 97.4% | 97.2% |
| 3593051 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.51 | 39.0 | 3.34e-01 | 82.9% | 95.5% |
| 3399334 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.51 | 45.0 | 4.06e-01 | 100.0% | 98.2% |
| 4886317 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.51 | 40.0 | 4.24e-01 | 99.1% | 97.1% |
| 3595463 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.50 | 45.0 | 4.36e-01 | 100.0% | 93.1% |