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bro

Euk-Vir

Spodoptera_frugiperda_granulovirus

bro__YP_009121842__Spodoptera_frugiperda_granulovirus__307454

Identity

Accession:: YP_009121842 ↗
Protein ID:: bro
Kingdom:: euk

Quality

62.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Spodoptera_frugiperda_granulovirus

TaxID: 307454

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-142

PDB

D2 high residues 185-261

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7rh9A01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.58	48.0	3.97e-01	97.4%	85.9%
5vt9B01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.55	34.0	3.49e-01	80.5%	64.4%
2k7bA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.54	35.0	3.56e-01	89.6%	65.8%
3l09A02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	31.0	3.04e-01	96.1%	51.2%
2dqlA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	40.0	3.62e-01	88.3%	65.2%
4zoqM00	3.40.50.200	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain	0.52	41.0	2.82e-01	92.2%	93.1%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4078914	101.1.9.30 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N	0.53	37.0	3.74e-01	77.9%	75.0%
5919	327.11.2.1 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1	0.52	39.0	3.69e-01	100.0%	68.1%
4863385	2003.1.2.15 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3	0.51	43.0	3.41e-01	98.7%	65.4%
5045315	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	34.0	3.03e-01	70.1%	52.2%

D3 high residues 266-385

PDB

Domain cluster: rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02498.23 best	Bro-N	41.0	3.30e-10	82.5%	97.9%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4i14A02	3.40.50.10990	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II	0.54	39.0	3.84e-01	98.3%	69.8%
2dchX02	3.10.28.10	Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases	0.52	36.0	3.76e-01	88.3%	77.5%
2w5eA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.51	29.0	3.57e-01	100.0%	90.5%
3o2iA00	3.30.70.2710	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	30.0	3.38e-01	88.3%	75.3%
3dxpA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.51	31.0	3.45e-01	75.0%	78.5%
3qitB00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.51	37.0	2.83e-01	95.8%	32.5%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3983963	101.1.9.41 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N	0.70	58.0	6.18e-01	90.8%	100.0%
4954530	101.1.9.143 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM	0.69	58.0	5.97e-01	90.8%	98.3%
3651210	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.66	25.0	3.54e-01	72.5%	70.0%
5049591	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.57	32.0	4.10e-01	100.0%	100.0%
3325360	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.55	26.0	3.30e-01	97.5%	73.9%
3786329	386.1.1.1 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2	0.52	25.0	3.29e-01	86.7%	90.9%
5041343	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.51	22.0	2.71e-01	73.3%	60.0%
3867103	3417.1.1.1 ↗	a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS	0.50	33.0	3.50e-01	92.5%	76.2%

D4 high residues 618-714

PDB

Domain cluster: rep: masp6.10_like_protein__YP_009552263__Malacosoma_neustria_nucleopolyhedrovirus__38012__D102-186

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jveA00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.73	38.0	4.40e-01	92.8%	69.0%
3oreA01	3.30.1360.40	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.63	42.0	4.87e-01	89.7%	100.0%
1ybtB00	3.30.70.1230	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain	0.58	43.0	3.54e-01	91.8%	44.2%
3cgiA00	3.30.70.1710	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain	0.57	48.0	4.63e-01	100.0%	80.4%
3e3xA01	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.56	47.0	4.52e-01	90.7%	89.4%
1yk9A00	3.30.70.1230	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain	0.56	44.0	3.56e-01	91.8%	44.6%
2kwaA00	3.30.1360.40	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.53	46.0	4.59e-01	99.0%	94.1%
1i7qA00	3.60.120.10	Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase	0.52	47.0	2.93e-01	100.0%	77.8%
3hdoA01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.51	40.0	3.65e-01	92.8%	63.1%
2gqfA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.51	44.0	3.31e-01	95.9%	92.4%
3iylW01	3.90.1810.10	Alpha Beta › Alpha-Beta Complex › Reovirus components fold › Reovirus components	0.51	41.0	2.78e-01	88.7%	27.3%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3802175	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.68	45.0	4.63e-01	92.8%	69.5%
3264621	304.56.1.0 ↗	a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like	0.66	48.0	4.59e-01	91.8%	65.2%
5079598	5104.1.1.0 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases	0.65	48.0	4.47e-01	100.0%	63.0%
3272417	5104.1.1.2 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45	0.62	48.0	4.22e-01	100.0%	56.4%
4931929	821.1.1.14 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797	0.60	49.0	5.09e-01	99.0%	95.6%
3619710	5104.1.1.0 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases	0.58	46.0	4.03e-01	99.0%	56.0%
3631329	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.58	38.0	4.23e-01	91.8%	88.0%
3998708	5104.1.1.2 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45	0.58	46.0	4.06e-01	99.0%	56.7%
4978015	3016.1.1.0 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases	0.57	43.0	4.30e-01	96.9%	79.0%
3698242	821.1.1.10 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113	0.57	50.0	4.69e-01	100.0%	79.7%
3739575	327.11.2.1 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1	0.57	42.0	4.34e-01	96.9%	84.4%
3397043	306.5.1.0 ↗	a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP	0.56	43.0	4.74e-01	99.0%	100.0%
5063788	1.1.9.3 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE	0.55	46.0	3.91e-01	94.8%	96.6%
4954533	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	37.0	3.91e-01	91.8%	81.2%
4974759	1.1.9.0 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain	0.52	43.0	3.10e-01	93.8%	48.4%
4966180	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	46.0	4.08e-01	99.0%	82.1%
3742752	3257.1.1.1 ↗	a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N	0.51	42.0	3.32e-01	89.7%	60.5%
None	—		0.51	44.0	3.29e-01	95.9%	91.2%
3972982	2003.1.2.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.51	44.0	3.31e-01	95.9%	94.7%
None	—		0.51	44.0	3.31e-01	95.9%	93.1%
4955790	3016.1.1.2 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3	0.51	43.0	4.22e-01	93.8%	91.4%