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bro

Euk-Vir

Spodoptera_frugiperda_granulovirus

bro__YP_009121879__Spodoptera_frugiperda_granulovirus__307454

Identity

Accession:
YP_009121879 ↗
Protein ID:
bro
Kingdom:
euk

Quality

81.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Spodoptera_frugiperda_granulovirus

TaxID: 307454

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-102
PDB
Domain cluster: rep: ORF103__YP_009345821__Mythimna_unipuncta_granulovirus_B__2169746__D14-100
D2 high residues 140-246
PDB
Domain cluster: rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02498.23 best Bro-N 28.6 2.40e-06 81.3% 75.0%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.71 56.0 5.83e-01 99.1% 90.9%
1n4nA00 3.30.30.10 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like 0.61 21.0 3.05e-01 88.8% 66.0%
2pffB05 3.30.70.2430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 30.0 3.73e-01 86.0% 86.9%
1pp8O00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 35.0 3.67e-01 93.5% 67.0%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.57 49.0 4.96e-01 95.3% 96.3%
1ze0A02 1.10.4070.10 Mainly Alpha › Orthogonal Bundle › putative redox-enzyme maturation protein fold › putative redox-enzyme maturation protein domain 0.56 33.0 3.70e-01 88.8% 76.9%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 38.0 3.53e-01 94.4% 55.1%
1r89A04 3.30.70.1550 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Archaeal tRNA CCA-adding enzyme catalytic domain 0.55 25.0 3.56e-01 82.2% 100.0%
4feuF01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 33.0 3.93e-01 75.7% 94.5%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 40.0 3.81e-01 97.2% 68.8%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.51 28.0 2.63e-01 87.9% 44.4%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 28.0 3.22e-01 100.0% 80.3%
3mahA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 32.0 3.70e-01 82.2% 95.7%
3im8A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.50 33.0 3.84e-01 86.9% 98.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.77 67.0 6.84e-01 100.0% 94.3%
3798434 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 53.0 5.28e-01 83.2% 76.1%
2411452 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 56.0 5.20e-01 100.0% 69.6%
3629193 101.1.9.23 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TdIF1_2nd 0.68 53.0 5.18e-01 86.0% 75.7%
3203041 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 54.0 5.59e-01 96.3% 95.0%
3983963 101.1.9.41 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.64 57.0 5.80e-01 96.3% 100.0%
388408 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.64 36.0 3.53e-01 71.0% 49.2%
3731164 101.1.9.37 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › CRC_subunit 0.62 51.0 5.04e-01 91.6% 83.3%
4564454 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.60 33.0 3.38e-01 74.8% 52.4%
3180751 101.1.9.90 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › NOL10_2nd 0.60 31.0 4.07e-01 77.6% 96.4%
2320836 4340.1.1.1 ↗ a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 0.58 31.0 3.74e-01 76.6% 80.3%
3624973 242.2.1.2 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.57 39.0 4.45e-01 92.5% 95.0%
4025274 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 31.0 3.50e-01 84.1% 78.7%
1844183 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.53 28.0 2.65e-01 87.9% 42.4%
3973239 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.52 33.0 3.47e-01 84.1% 72.3%
4948821 7509.1.1.1 ↗ a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › DUF34_NIF3 0.51 31.0 3.32e-01 80.4% 69.9%
5076264 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.51 26.0 3.11e-01 87.9% 75.4%
4329193 601.7.1.8 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas_Csm6_HEPN 0.50 40.0 3.50e-01 86.9% 96.5%
3712946 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.50 32.0 3.52e-01 85.0% 83.7%
3386331 3016.1.1.3 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_5 0.50 38.0 3.70e-01 83.2% 77.4%
D3 high residues 275-364
PDB
Domain cluster: rep: ORF103__YP_009345821__Mythimna_unipuncta_granulovirus_B__2169746__D14-100