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bro

Euk-Vir

Trichoplusia_ni_granulovirus_LBIV-12

bro__YP_009506197__Trichoplusia_ni_granulovirus_LBIV-12__1916701

Identity

Accession:: YP_009506197 ↗
Protein ID:: bro
Kingdom:: euk

Quality

77.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Trichoplusia_ni_granulovirus_LBIV-12

TaxID: 1916701

Cluster

View cluster (16 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-103

PDB

Domain cluster: rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02498.23 best	Bro-N	69.3	5.00e-19	87.1%	81.2%

D2 high residues 252-356_402-427

PDB

Domain cluster: rep: BV_ODV-E26__YP_009666490__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D138-232

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1d1rA00	3.30.780.10	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain	0.65	36.0	4.45e-01	93.1%	86.7%
3h20A01	3.30.1490.240	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain	0.63	29.0	3.95e-01	97.7%	84.8%
1szsA01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.55	36.0	3.34e-01	97.7%	51.5%
4e5xG00	2.60.40.3530	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	28.0	3.23e-01	93.1%	67.7%
4mf9B01	3.40.1570.10	Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains	0.51	36.0	3.37e-01	71.8%	77.0%
2rdpA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	27.0	2.72e-01	83.2%	46.4%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4016088	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.73	57.0	6.25e-01	95.4%	100.0%
3199320	4099.1.1.0 ↗	a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like	0.66	43.0	4.58e-01	96.2%	73.9%
3631990	4099.1.1.0 ↗	a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like	0.66	43.0	3.95e-01	96.2%	51.5%
3553704	382.1.1.1 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6	0.65	32.0	3.85e-01	89.3%	68.9%
5065436	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.65	33.0	4.60e-01	100.0%	100.0%
5041530	821.1.1.4 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123	0.64	55.0	5.54e-01	90.8%	100.0%
5057765	4955.1.1.0 ↗	a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	0.61	36.0	4.41e-01	92.4%	95.0%
4560889	11.1.6.5 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND	0.55	45.0	4.68e-01	93.9%	92.0%
3553310	12.5.1.18 ↗	beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › UPA-FIIND	0.55	45.0	4.68e-01	93.9%	92.0%
4026479	821.1.1.1 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG	0.55	40.0	4.05e-01	75.6%	76.2%
3898503	11.1.6.5 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND	0.54	45.0	4.52e-01	93.9%	88.9%
3182286	821.1.1.0 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease	0.54	38.0	3.43e-01	74.0%	57.8%
5050254	866.1.1.2 ↗	a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC	0.53	40.0	3.44e-01	77.9%	66.3%
1681129	3975.1.1.1 ↗	a+b two layers › uncharacterized protein lpg1496 N-terminal domain › uncharacterized protein lpg1496 N-terminal domain › uncharacterized protein lpg1496 N-terminal domain › lpg1496_N	0.53	38.0	3.80e-01	93.1%	72.6%
None	—		0.52	31.0	3.63e-01	90.8%	83.2%
5050255	866.1.1.2 ↗	a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC	0.51	38.0	3.24e-01	77.9%	66.2%

D3 medium residues 153-250

PDB

Domain cluster: rep: BRO__YP_003422497__Pseudalatia_unipuncta_granulovirus__36355__D143-238