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capping_enzyme

Euk-Vir

Changuinola_virus

capping_enzyme__YP_008719927__Changuinola_virus__40052

Identity

Accession:
YP_008719927 ↗
Protein ID:
capping_enzyme
Kingdom:
euk

Quality

93.1 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Sedoreoviridae› Orbivirus› Changuinola_virus

TaxID: 40052

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 180-392
PDB
Domain cluster: rep: polyA_polymerase_reg_subunit__YP_009001345__Pithovirus_sibericum__1450746__D33-211
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05059.21 best Orbi_VP4 303.9 2.70e-90 100.0% 33.3%
D2 medium residues 7-96
PDB
Domain cluster: rep: VP4__YP_008719907__Mobuck_virus__1408137__D7-110
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05059.21 best Orbi_VP4 115.0 3.80e-33 100.0% 13.8%
D3 medium residues 393-465
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05059.21 best Orbi_VP4 90.5 1.00e-25 100.0% 11.3%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rkxA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 50.0 3.85e-01 100.0% 65.6%
1xrsA00 3.20.20.440 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit 0.58 50.0 3.05e-01 100.0% 25.0%
2e7jA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.57 44.0 3.21e-01 87.7% 46.6%
6xigA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 47.0 3.26e-01 100.0% 51.5%
2m1xA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.57 46.0 3.64e-01 91.8% 57.5%
1oi2A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.56 47.0 3.72e-01 100.0% 59.0%
2bkwA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 42.0 3.01e-01 86.3% 33.0%
2fp4A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 48.0 4.11e-01 100.0% 68.3%
3islA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 42.0 3.06e-01 87.7% 42.7%
3dnfA03 3.40.1010.20 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain 0.55 37.0 3.43e-01 75.3% 52.5%
1gcuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 47.0 3.81e-01 100.0% 54.2%
1kamA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 36.0 2.82e-01 72.6% 40.0%
4g1vA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.53 43.0 3.63e-01 94.5% 51.5%
1ydgA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 41.0 3.12e-01 89.0% 70.1%
2xmzA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 44.0 3.13e-01 100.0% 87.2%
4o5fA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 36.0 3.10e-01 74.0% 55.7%
5xb6A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 3.32e-01 100.0% 74.9%
1y8qB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 43.0 3.15e-01 94.5% 61.3%
2g5xA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.52 36.0 2.80e-01 72.6% 100.0%
2vk1A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.52 43.0 3.40e-01 100.0% 62.6%
2nx2A00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 3.12e-01 86.3% 91.0%
6pnzA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.51 39.0 3.19e-01 89.0% 42.1%
1u8xX01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 3.16e-01 87.7% 39.2%
4pfyA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.51 35.0 2.59e-01 75.3% 56.4%
5xemB01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.25e-01 100.0% 61.8%
2hjsA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 39.0 3.19e-01 87.7% 82.0%
2g6tA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 34.0 3.17e-01 71.2% 68.4%
1p5hA01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.50 40.0 2.63e-01 87.7% 90.3%
2xdqA03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.50 35.0 3.04e-01 74.0% 46.8%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4100593 7585.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.61 48.0 4.09e-01 100.0% 52.0%
4128951 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.57 48.0 3.30e-01 100.0% 51.7%
4013371 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.56 48.0 4.09e-01 100.0% 66.4%
5041661 2488.1.1.16 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SPOUT_MTase_2 0.55 40.0 3.69e-01 78.1% 79.0%
3386860 7512.1.1.16 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Capsule_synth 0.55 42.0 2.70e-01 83.6% 50.6%
3512526 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.55 46.0 2.86e-01 98.6% 36.8%
3938013 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.55 46.0 3.06e-01 100.0% 51.0%
3997892 2007.1.16.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 0.55 37.0 3.21e-01 71.2% 55.2%
3784410 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.54 43.0 3.39e-01 91.8% 52.6%
4605383 2007.1.14.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.54 41.0 3.11e-01 84.9% 56.4%
4891237 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.54 43.0 2.75e-01 87.7% 92.7%
5041855 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.54 45.0 3.46e-01 100.0% 61.3%
3804428 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 42.0 3.04e-01 86.3% 41.3%
3518465 7516.1.1.85 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_4 0.54 42.0 2.94e-01 84.9% 28.7%
3958604 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.54 36.0 2.69e-01 83.6% 25.1%
5063561 2007.1.16.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 0.53 35.0 3.22e-01 91.8% 49.0%
3258605 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 44.0 2.82e-01 100.0% 21.3%
3940742 2007.1.16.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 0.53 37.0 3.28e-01 76.7% 55.8%
5030416 2007.1.16.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn 0.53 36.0 3.20e-01 72.6% 56.5%
5062828 2007.1.16.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn 0.52 38.0 3.32e-01 91.8% 49.6%
4013505 7598.1.1.0 ↗ a/b three-layered sandwiches › Resistance protein Tm-1 first domain › Resistance protein Tm-1 first domain › Resistance protein Tm-1 first domain 0.52 39.0 3.03e-01 83.6% 51.7%
3605597 2007.1.2.27 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase 0.51 43.0 3.58e-01 100.0% 50.7%
3630871 7577.1.1.8 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Beta_elim_lyase 0.51 44.0 3.01e-01 100.0% 45.5%
5026684 7564.1.1.1 ↗ a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Flavoprotein 0.51 44.0 3.60e-01 100.0% 61.4%
4974550 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.51 43.0 3.34e-01 100.0% 60.0%
3611434 2007.1.2.27 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase 0.50 42.0 3.44e-01 100.0% 47.3%
3724023 7579.1.1.18 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_2 0.50 42.0 3.03e-01 100.0% 78.0%