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capping_enzyme

Euk-Vir

Chobar_Gorge_virus

capping_enzyme__YP_009158903__Chobar_Gorge_virus__1679172

Identity

Accession:: YP_009158903 ↗
Protein ID:: capping_enzyme
Kingdom:: euk

Quality

82.9 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Sedoreoviridae› Orbivirus› Chobar_Gorge_virus

TaxID: 1679172

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-115

PDB

Domain cluster: rep: VP4__YP_008719907__Mobuck_virus__1408137__D7-110

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05059.21 best	Orbi_VP4	119.6	1.60e-34	100.0%	17.5%

D2 medium residues 117-137_383-492

PDB

Domain cluster: rep: VP3__YP_008136241__Rotavirus_G_chicken_03V0567_DEU_2003__994995__D197-250_406-523

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05059.21 best	Orbi_VP4	132.6	1.90e-38	84.7%	17.7%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2vdwG00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.68	61.0	4.82e-01	98.5%	92.0%
1rjgA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.64	58.0	4.47e-01	98.5%	72.9%
3cc8A00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.62	55.0	4.72e-01	98.5%	96.7%
1pjzA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.59	52.0	4.58e-01	98.5%	96.5%
4pwyA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.58	51.0	4.18e-01	98.5%	74.8%
1ne2B00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.57	51.0	4.57e-01	98.5%	86.9%
1lhpA00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.56	45.0	3.50e-01	88.5%	85.3%
1cc8A00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	23.0	3.00e-01	92.4%	66.7%
1eg2A00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.53	44.0	3.46e-01	89.3%	74.1%
2oktA02	3.20.20.120	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain	0.51	39.0	3.40e-01	81.7%	85.0%
8hi7B01	3.20.20.150	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes	0.51	45.0	3.58e-01	100.0%	84.8%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3286959	2003.1.5.35 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM	0.73	66.0	5.06e-01	98.5%	73.7%
4025300	2003.1.5.79 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23	0.65	59.0	4.98e-01	98.5%	91.2%
3813686	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.62	51.0	4.03e-01	87.8%	84.9%
4947648	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.60	54.0	4.79e-01	97.7%	84.9%
4020104	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.60	54.0	3.88e-01	98.5%	53.0%
3966795	304.4.1.21 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › FtsX_ECD	0.58	32.0	3.52e-01	92.4%	65.7%
3694066	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.58	52.0	3.75e-01	99.2%	39.5%
4933498	2003.1.5.46 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS	0.56	50.0	4.20e-01	97.7%	98.2%
3587383	304.4.1.21 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › FtsX_ECD	0.55	32.0	3.49e-01	92.4%	69.5%
4009025	304.4.1.21 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › FtsX_ECD	0.55	31.0	3.46e-01	92.4%	68.6%
3950832	2003.1.5.42 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21	0.55	47.0	3.74e-01	97.7%	95.9%
3978396	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.54	31.0	3.43e-01	92.4%	71.0%
3999247	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.53	22.0	2.93e-01	74.8%	71.7%
5062110	2003.1.1.51 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP	0.52	46.0	4.13e-01	100.0%	81.9%
5057613	3110.1.1.0 ↗	a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain	0.52	40.0	4.20e-01	96.9%	93.0%
4340168	246.3.1.3 ↗	a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos_2	0.51	46.0	3.85e-01	100.0%	85.2%
4951928	101.1.9.75 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF61	0.51	20.0	2.74e-01	87.8%	68.3%
3472117	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	27.0	2.50e-01	95.4%	36.0%
4067201	12.1.1.3 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C	0.50	38.0	3.95e-01	98.5%	85.4%

D3 medium residues 158-169_289-301_345-382

PDB

Domain cluster: representative

D4 medium residues 170-288_302-344

PDB

Domain cluster: rep: polyA_polymerase_reg_subunit__YP_009001345__Pithovirus_sibericum__1450746__D33-211

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05059.21 best	Orbi_VP4	166.0	1.40e-48	100.0%	28.0%

D5 medium residues 493-635

PDB

Domain cluster: rep: VP4__YP_008719907__Mobuck_virus__1408137__D509-646

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05059.21 best	Orbi_VP4	199.4	1.10e-58	93.7%	20.3%