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capping_enzyme_large_subunit

Euk-Vir

Cotia_virus_SPAn232

capping_enzyme_large_subunit__YP_005296283__Cotia_virus_SPAn232__930275

Identity

Accession:
YP_005296283 ↗
Protein ID:
capping_enzyme_large_subunit
Kingdom:
euk

Quality

87.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Oryzopoxvirus› Cotia_virus_SPAn232

TaxID: 930275

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 411-519
PDB
Domain cluster: rep: putative_D1R_protein__YP_010085774__Orthopoxvirus_Abatino__2478919__D399-522
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21005.5 best OB_MCEL_GT 174.0 2.50e-51 100.0% 79.7%
D2 medium residues 45-154_174-192
PDB
Domain cluster: rep: mRNA_capping_enzyme_large_subunit__YP_010085378__Eastern_grey_kangaroopox_virus__2042482__D72-123_138-160_176-203
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10640.15 best MCEL_TPase 166.0 1.10e-48 87.6% 56.6%
D3 medium residues 155-173_193-241
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10640.15 best MCEL_TPase 35.0 1.40e-08 64.7% 21.7%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dnsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 49.0 4.02e-01 89.7% 88.5%
2i79D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 50.0 3.77e-01 91.2% 70.7%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 48.0 4.40e-01 88.2% 68.1%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.59 45.0 3.48e-01 83.8% 44.7%
2r7hB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 48.0 3.70e-01 91.2% 71.1%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 39.0 3.02e-01 70.6% 92.5%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.56 42.0 3.67e-01 94.1% 50.4%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 42.0 3.49e-01 80.9% 98.3%
3kd4A03 2.60.120.1130 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 3.24e-01 80.9% 39.4%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 45.0 3.70e-01 95.6% 60.2%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 41.0 3.34e-01 85.3% 52.9%
4oycB00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.54 42.0 3.92e-01 89.7% 86.5%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.53 37.0 2.93e-01 72.1% 72.9%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 44.0 3.57e-01 98.5% 89.3%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 43.0 3.61e-01 95.6% 57.6%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 42.0 3.35e-01 92.6% 50.7%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 39.0 3.48e-01 80.9% 100.0%
8p2bA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.52 38.0 3.69e-01 82.4% 68.8%
3o5yB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 37.0 3.02e-01 79.4% 91.2%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 39.0 3.74e-01 80.9% 80.5%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.51 36.0 2.91e-01 73.5% 77.3%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 38.0 2.93e-01 80.9% 55.4%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 2.89e-01 100.0% 70.2%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 39.0 3.56e-01 85.3% 75.8%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049973 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 40.0 3.20e-01 70.6% 75.0%
3960522 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.58 41.0 3.93e-01 75.0% 65.0%
387703 636.1.1.1 ↗ alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain › IpaB_EvcA 0.57 38.0 2.78e-01 70.6% 67.7%
4025219 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.56 47.0 3.44e-01 97.1% 72.7%
5048375 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 41.0 3.35e-01 77.9% 93.6%
4054903 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 42.0 2.45e-01 86.8% 41.7%
4218926 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 41.0 3.39e-01 79.4% 97.5%
3321360 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.55 42.0 4.07e-01 80.9% 78.7%
3770448 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 46.0 3.54e-01 97.1% 50.0%
5071962 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.25e-01 82.4% 90.3%
3945393 7089.1.1.2 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.54 40.0 3.77e-01 77.9% 98.8%
5050074 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 40.0 3.29e-01 82.4% 92.6%
3285978 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 41.0 3.58e-01 88.2% 52.2%
3212508 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.54 45.0 2.81e-01 98.5% 27.6%
4027383 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 46.0 2.92e-01 100.0% 66.1%
3713172 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.53 38.0 2.79e-01 76.5% 60.0%
5058066 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.53 40.0 3.37e-01 80.9% 89.6%
3260689 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 45.0 2.92e-01 100.0% 60.6%
3413411 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.53 44.0 2.72e-01 97.1% 92.1%
5073525 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 39.0 3.25e-01 80.9% 93.6%
4397552 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 43.0 3.55e-01 91.2% 96.0%
3512065 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 34.0 3.54e-01 77.9% 70.8%
3501861 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 35.0 3.07e-01 80.9% 46.7%
4020476 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 42.0 2.76e-01 100.0% 49.7%
3499681 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.51 36.0 3.30e-01 76.5% 96.8%
5013584 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.50 41.0 4.13e-01 89.7% 92.9%
4098000 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.50 42.0 3.52e-01 92.6% 94.2%
3646034 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.50 40.0 3.27e-01 94.1% 87.3%
5026550 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 37.0 3.19e-01 80.9% 89.6%
5054600 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.50 37.0 3.18e-01 80.9% 74.8%
D4 medium residues 250-405
PDB
Domain cluster: rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21004.4 best MCEL_GT_NTPase 139.4 5.30e-41 64.7% 87.6%
D5 medium residues 587-722_776-793
PDB
Domain cluster: rep: IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_100275611__D486-632
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03291.23 best mRNA_G-N7_MeTrfase 50.0 3.40e-13 96.8% 40.0%
D6 medium residues 723-775_826-854
PDB
Domain cluster: rep: mRNA_capping_enzyme_large_subunit__YP_009408284__Murmansk_poxvirus__2025359__D708-760_793-839