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capping_enzyme_small_subunit
Euk-VirCotia_virus_SPAn232
capping_enzyme_small_subunit__YP_005296294__Cotia_virus_SPAn232__930275
Identity
- Accession:
- YP_005296294 ↗
- Protein ID:
- capping_enzyme_small_subunit
- Kingdom:
- euk
Quality
75.6
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Oryzopoxvirus›
Cotia_virus_SPAn232
TaxID: 930275
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-46_68-108_120-235
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03341.21 best | Pox_mRNA-cap | 232.2 | 1.30e-68 | 77.8% | 59.2% |
| PF03341.21 | Pox_mRNA-cap | 62.8 | 5.50e-17 | 23.6% | 15.5% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4n49A00 | 3.40.50.12760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.77 | 73.0 | 5.72e-01 | 100.0% | 83.8% |
| 7nadw01 | 3.40.50.12760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.77 | 42.0 | 5.76e-01 | 74.9% | 100.0% |
| 1ej6A03 | 3.40.50.10760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Reovirus core | 0.61 | 49.0 | 4.50e-01 | 83.7% | 89.0% |
| 6yu8A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 54.0 | 4.95e-01 | 96.1% | 93.1% |
| 1mjfB02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 40.0 | 3.96e-01 | 77.3% | 98.6% |
| 3iylW03 | 3.40.50.10760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Reovirus core | 0.53 | 49.0 | 4.59e-01 | 99.5% | 91.6% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 24.0 | 3.28e-01 | 92.1% | 85.8% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4855947 | 2003.1.5.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Pox_mRNA-cap | 0.90 | 88.0 | 7.58e-01 | 100.0% | 81.6% |
| 3498877 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.78 | 74.0 | 5.66e-01 | 100.0% | 83.8% |
| 4499367 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.78 | 74.0 | 5.83e-01 | 100.0% | 85.4% |
| 3225847 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.78 | 73.0 | 5.53e-01 | 100.0% | 79.3% |
| 3415740 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.77 | 72.0 | 5.41e-01 | 100.0% | 72.6% |
| 4051520 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.76 | 72.0 | 5.62e-01 | 100.0% | 80.7% |
| 3395998 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.76 | 72.0 | 5.59e-01 | 100.0% | 80.5% |
| 4030239 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.76 | 70.0 | 5.48e-01 | 98.5% | 84.9% |
| 3262175 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.75 | 70.0 | 5.46e-01 | 100.0% | 83.3% |
| 3718327 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.71 | 53.0 | 4.77e-01 | 75.4% | 94.3% |
| 3886399 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.70 | 66.0 | 5.90e-01 | 100.0% | 90.2% |
| 4027282 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.70 | 49.0 | 4.15e-01 | 70.9% | 92.2% |
| 3584898 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.70 | 66.0 | 5.16e-01 | 100.0% | 82.5% |
| 3272934 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.69 | 51.0 | 4.32e-01 | 75.9% | 61.3% |
| 4253110 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.68 | 50.0 | 4.68e-01 | 75.4% | 88.0% |
| None | — | 0.68 | 51.0 | 4.68e-01 | 76.8% | 75.8% | |
| 3545685 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.68 | 63.0 | 5.44e-01 | 100.0% | 84.1% |
| 3266012 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.67 | 49.0 | 4.76e-01 | 74.4% | 89.3% |
| 3785963 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.66 | 50.0 | 4.68e-01 | 76.8% | 89.2% |
| 3580424 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.64 | 43.0 | 4.59e-01 | 70.0% | 77.7% |
| 3621648 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.64 | 60.0 | 4.24e-01 | 100.0% | 53.4% |
| 3929585 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.62 | 58.0 | 4.77e-01 | 100.0% | 88.0% |
| 1137615 | 2003.1.5.90 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Reovirus_L2_MT1 | 0.61 | 49.0 | 4.28e-01 | 83.7% | 77.7% |
| 4024084 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 56.0 | 4.52e-01 | 100.0% | 83.8% |
| 2718677 | 2003.1.5.83 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltrans_Mon_2nd | 0.59 | 55.0 | 4.97e-01 | 99.0% | 91.0% |
| 4100871 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.58 | 45.0 | 4.63e-01 | 79.8% | 97.4% |
| 3737728 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.58 | 45.0 | 4.43e-01 | 80.8% | 95.0% |
| 3244344 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.57 | 54.0 | 4.32e-01 | 99.5% | 81.3% |
| 3442128 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.57 | 45.0 | 4.33e-01 | 81.8% | 99.1% |
| 5048571 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.57 | 44.0 | 4.41e-01 | 79.8% | 97.6% |
| 5032223 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.56 | 46.0 | 4.66e-01 | 86.2% | 99.5% |
| 5078688 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.55 | 48.0 | 4.76e-01 | 90.6% | 99.0% |
| 2494152 | 2003.1.5.87 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Reov_VP3_MTase1 | 0.53 | 49.0 | 4.16e-01 | 99.5% | 90.5% |
| 185352 | 2003.1.5.90 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Reovirus_L2_MT1 | 0.53 | 49.0 | 4.63e-01 | 99.5% | 92.7% |
| 3697122 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 25.0 | 3.26e-01 | 91.1% | 83.6% |
D2
medium
residues 47-67_236-284
Domain cluster:
rep: 89L_protein__NP_073474__Yaba-like_disease_virus__132475__D1-13_242-287
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03341.21 best | Pox_mRNA-cap | 73.9 | 2.30e-20 | 75.7% | 18.0% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 44.0 | 3.83e-01 | 70.0% | 47.7% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.65 | 44.0 | 4.39e-01 | 70.0% | 70.3% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 47.0 | 4.27e-01 | 82.9% | 84.9% |
| 2c9kA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.59 | 52.0 | 3.60e-01 | 98.6% | 65.7% |
| 1zylA03 | 1.20.1270.170 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 48.0 | 4.30e-01 | 100.0% | 92.2% |
| 1qmgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 43.0 | 2.98e-01 | 91.4% | 76.8% |
| 2wpgA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 41.0 | 3.85e-01 | 82.9% | 74.7% |
| 4kjmB01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.53 | 40.0 | 4.19e-01 | 84.3% | 88.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4855947 | 2003.1.5.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Pox_mRNA-cap | 0.94 | 88.0 | 5.61e-01 | 100.0% | 83.0% |
| 3511563 | 192.29.1.143 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › CCDC28 | 0.67 | 51.0 | 4.50e-01 | 82.9% | 82.9% |
| 3917126 | 174.1.1.33 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erg28 | 0.61 | 49.0 | 3.80e-01 | 87.1% | 52.7% |
| 4175767 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.60 | 45.0 | 4.00e-01 | 82.9% | 77.1% |
| 5049185 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.56 | 50.0 | 3.50e-01 | 100.0% | 39.6% |
| 5058934 | 2004.1.1.1221 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27431 | 0.51 | 41.0 | 2.63e-01 | 85.7% | 20.6% |