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capsid
Euk-VirHuman_immunodeficiency_virus_1
capsid__NP_579880__Human_immunodeficiency_virus_1__11676
Identity
- Accession:
- NP_579880 ↗
- Protein ID:
- capsid
- Kingdom:
- euk
Quality
88.5
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Retroviridae›
Lentivirus›
Human_immunodeficiency_virus_1
TaxID: 11676
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-145
Domain cluster:
rep: gag_protein__YP_009305199__Simian_retrovirus_8__1904439__D302-440
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00607.26 best | Gag_p24 | 50.0 | 4.00e-13 | 90.3% | 85.2% |
D2
high
residues 150-218
Domain cluster:
rep: p24_CA__NP_955618__Human_T-cell_leukemia_virus_type_I__11908__D133-202
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19317.5 best | Gag_p24_C | 111.6 | 1.60e-32 | 98.6% | 91.9% |