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capsid
Euk-VirHMO_Astrovirus_A
capsid__YP_003275953__HMO_Astrovirus_A__682382
Identity
- Accession:
- YP_003275953 ↗
- Protein ID:
- capsid
- Kingdom:
- euk
Quality
71.6
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Stellavirales›
Astroviridae›
Mamastrovirus›
HMO_Astrovirus_A
TaxID: 682382
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 73-257
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03115.21 best | Astro_capsid_N | 188.4 | 2.10e-55 | 96.2% | 72.3% |
D2
high
residues 261-387
Domain cluster:
rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20751.3 best | SP2_M | 29.5 | 1.00e-06 | 96.1% | 70.9% |
D3
high
residues 418-669
Domain cluster:
rep: capsid_protein_precursor__YP_009041464__Bovine_astrovirus__1435485__D425-658
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1o7dC02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 19.0 | 2.86e-01 | 99.6% | 80.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047426 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.57 | 23.0 | 3.31e-01 | 92.9% | 77.4% |
| 5047424 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.57 | 23.0 | 3.26e-01 | 93.3% | 75.0% |
| 5044863 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.54 | 22.0 | 3.06e-01 | 96.0% | 71.5% |
| 4967007 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 22.0 | 3.39e-01 | 99.6% | 100.0% |
| 3512431 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 28.0 | 3.62e-01 | 100.0% | 88.3% |