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capsid
Euk-VirCulex_pipiens-associated_Tunisia_virus
capsid__YP_009553258__Culex_pipiens-associated_Tunisia_virus__2079148
Identity
- Accession:
- YP_009553258 ↗
- Protein ID:
- capsid
- Kingdom:
- euk
Quality
83.4
mean pLDDT
Cluster
View cluster (36 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-92_110-160
Domain cluster:
rep: hypothetical_protein__YP_009337424__Hubei_virga-like_virus_1__1923324__D95-184_198-245
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00721.28 best | TMV_coat | 72.4 | 7.60e-20 | 100.0% | 76.7% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rmvA00 | 1.20.120.70 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Tobacco mosaic virus-like, coat protein | 0.71 | 65.0 | 5.70e-01 | 100.0% | 78.2% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.62 | 37.0 | 4.59e-01 | 82.4% | 98.5% |
| 1s7bA00 | 1.10.3730.20 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.59 | 39.0 | 3.96e-01 | 73.1% | 67.9% |
| 4w8kA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.57 | 47.0 | 3.80e-01 | 87.0% | 72.7% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.57 | 39.0 | 4.48e-01 | 90.7% | 100.0% |
| 7pjdC01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 41.0 | 3.53e-01 | 75.0% | 63.1% |
| 1xjaB00 | 2.60.120.280 | Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC | 0.55 | 43.0 | 3.80e-01 | 81.5% | 100.0% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 36.0 | 4.15e-01 | 88.0% | 97.3% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 36.0 | 4.08e-01 | 76.9% | 98.6% |
| 3o26A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 3.29e-01 | 92.6% | 52.7% |
| 6ldiF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.86e-01 | 82.4% | 82.3% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.52 | 37.0 | 3.54e-01 | 73.1% | 99.2% |
| 3tw8A02 | 3.40.50.11500 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › DENN domain, C-terminal lobe | 0.52 | 38.0 | 3.34e-01 | 77.8% | 96.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3394141 | 601.6.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat | 0.90 | 86.0 | 7.53e-01 | 100.0% | 77.2% |
| 2989218 | 601.6.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat | 0.81 | 70.0 | 6.44e-01 | 100.0% | 73.7% |
| 3434386 | 601.6.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat | 0.80 | 74.0 | 6.62e-01 | 99.1% | 76.6% |
| 3400967 | 601.6.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat | 0.79 | 72.0 | 6.51e-01 | 99.1% | 79.3% |
| 4990109 | 633.22.1.1 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR | 0.66 | 48.0 | 4.83e-01 | 75.9% | 100.0% |
| 3211092 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.64 | 38.0 | 3.47e-01 | 75.9% | 43.4% |
| 3614754 | 5.1.4.301 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7 | 0.59 | 48.0 | 3.07e-01 | 90.7% | 18.1% |
| 3945115 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.58 | 43.0 | 3.68e-01 | 75.9% | 95.2% |
| 3591288 | 604.12.1.8 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT | 0.57 | 42.0 | 4.00e-01 | 88.0% | 65.6% |
| 3964888 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 39.0 | 3.22e-01 | 78.7% | 98.1% |
| 3860702 | 2004.5.1.13 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › SPA, Avl9 | 0.52 | 42.0 | 3.45e-01 | 88.0% | 93.2% |
| 3391378 | 2004.5.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › Folliculin_C | 0.52 | 42.0 | 3.53e-01 | 88.0% | 95.3% |
| 4169890 | 5.1.11.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta_propel | 0.51 | 39.0 | 2.48e-01 | 80.6% | 27.6% |