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capsid_maturation_protease
Euk-VirFalconid_herpesvirus_1
capsid_maturation_protease__YP_009046524__Falconid_herpesvirus_1__1510155
Identity
- Accession:
- YP_009046524 ↗
- Protein ID:
- capsid_maturation_protease
- Kingdom:
- euk
Quality
50.0
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Falconid_herpesvirus_1
TaxID: 1510155
Cluster
View cluster (25 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 46-84_136-186_247-261
Domain cluster:
rep: capsid_scaffold_protein__YP_010087576__Cervid_alphaherpesvirus_3__2115790__D26-92_156-174
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00716.23 best | Peptidase_S21 | 74.8 | 1.50e-20 | 52.4% | 16.6% |
D2
medium
residues 85-135_187-246
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00716.23 best | Peptidase_S21 | 30.1 | 6.00e-07 | 54.9% | 17.2% |
| PF00716.23 | Peptidase_S21 | 36.1 | 8.90e-09 | 49.5% | 15.1% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1at3A00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.90 | 87.0 | 6.68e-01 | 100.0% | 68.2% |
| 1cmvB00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.77 | 73.0 | 5.77e-01 | 100.0% | 67.0% |
| 5c82A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 33.0 | 2.87e-01 | 74.8% | 37.6% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 33.0 | 4.04e-01 | 75.7% | 97.0% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.54 | 29.0 | 3.20e-01 | 74.8% | 62.2% |
| 4eekA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 30.0 | 3.77e-01 | 74.8% | 98.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 788 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.90 | 87.0 | 6.68e-01 | 100.0% | 68.2% |
| 4946898 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.56 | 27.0 | 3.20e-01 | 75.7% | 64.0% |
| 2813289 | 101.1.1.71 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › KORA | 0.53 | 29.0 | 3.08e-01 | 76.6% | 59.8% |