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capsid_portal_protein

Euk-Vir

Equid_alphaherpesvirus_4

capsid_portal_protein__NP_045273__Equid_alphaherpesvirus_4__10331

Identity

Accession:: NP_045273 ↗
Protein ID:: capsid_portal_protein
Kingdom:: euk

Quality

68.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_4

TaxID: 10331

Cluster

View cluster (76 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 86-117_625-657

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2eh3A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.62	42.0	3.47e-01	70.8%	63.9%
1rv2D04	1.10.287.690	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain	0.62	34.0	3.37e-01	89.2%	48.6%
5h28A01	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.61	42.0	3.26e-01	72.3%	87.6%
4dciA00	6.10.140.1110	Special › Helix non-globular › Helix Hairpins ›	0.59	37.0	2.96e-01	100.0%	28.6%
5cqgA03	1.10.10.2210	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.57	44.0	4.21e-01	86.2%	97.5%
1t6sB02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	41.0	3.90e-01	75.4%	71.4%
2y1vA04	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	43.0	3.15e-01	83.1%	31.9%
5x56B00	1.20.58.810	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27	0.55	40.0	3.49e-01	80.0%	76.2%
2ip6A00	1.20.1440.140	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.51	37.0	3.32e-01	75.4%	78.2%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3415494	5029.1.1.0 ↗	extended segments › Oligosaccharyltransferase subunit ost4p › Oligosaccharyltransferase subunit ost4p › Oligosaccharyltransferase subunit ost4p	0.77	39.0	4.11e-01	80.0%	55.0%
3463557	6124.1.1.0 ↗	extended segments › Ubc7p-binding domain of Cue1p › Ubc7p-binding domain of Cue1p › Ubc7p-binding domain of Cue1p	0.73	46.0	4.01e-01	100.0%	44.2%
3288637	605.1.1.4 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3	0.72	39.0	3.72e-01	89.2%	46.7%
3396404	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.67	53.0	4.35e-01	89.2%	99.2%
4221177	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.66	37.0	4.16e-01	76.9%	72.0%
4540106	3396.1.1.3 ↗	extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › DUF4481	0.64	44.0	4.06e-01	100.0%	57.5%
5032045	4163.1.1.0 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like	0.62	44.0	3.79e-01	73.8%	81.0%
4828003	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.59	48.0	4.04e-01	93.8%	97.5%
3983659	4970.1.1.0 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I	0.57	39.0	3.98e-01	72.3%	93.8%

D2 medium residues 118-174_201-262

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	34.1	1.50e-08	98.3%	9.1%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3s84A02	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.59	45.0	4.08e-01	79.0%	66.9%
3g9gA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.54	42.0	3.26e-01	82.4%	81.6%
6wk3A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.54	37.0	3.50e-01	71.4%	90.3%
1t72A01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.52	41.0	4.15e-01	82.4%	100.0%
1zvuA03	1.10.268.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3	0.52	36.0	3.42e-01	82.4%	59.3%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3497633	5054.1.1.1 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan	0.61	36.0	2.50e-01	100.0%	18.6%
5039732	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.61	41.0	4.22e-01	81.5%	71.7%
4929602	1079.1.1.0 ↗	alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA	0.59	35.0	2.88e-01	77.3%	32.6%
4015729	192.7.1.0 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm	0.57	37.0	3.73e-01	92.4%	62.4%
3194353	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	50.0	3.48e-01	97.5%	54.9%
3853566	604.5.1.0 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895)	0.57	43.0	4.37e-01	78.2%	90.4%
3874601	5054.1.1.1 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan	0.56	35.0	3.70e-01	100.0%	69.1%
4091932	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.55	42.0	4.05e-01	80.7%	74.8%
3780725	5073.1.2.4 ↗	alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain › PhoLip_ATPase_N	0.55	40.0	3.26e-01	78.2%	41.8%
3214759	5001.1.1.84 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz	0.55	44.0	3.20e-01	85.7%	99.4%
3596574	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.54	42.0	3.71e-01	80.7%	63.0%
3239892	4336.2.1.1 ↗	alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2	0.53	29.0	3.21e-01	95.0%	63.4%
4027588	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.51	43.0	3.91e-01	91.6%	74.4%
4957738	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.51	37.0	3.40e-01	76.5%	89.4%
3205253	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	39.0	3.51e-01	82.4%	57.6%
3479700	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	36.0	3.59e-01	72.3%	94.2%
3164734	589.1.1.2 ↗	alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3	0.51	34.0	2.97e-01	73.9%	44.3%
5044196	3962.1.1.0 ↗	alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit	0.50	37.0	3.72e-01	95.8%	75.8%
3770218	101.1.4.1 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou	0.50	30.0	3.26e-01	78.2%	68.9%
3634169	4177.1.1.27 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_4	0.50	36.0	2.75e-01	74.8%	78.5%

D3 medium residues 441-496

PDB

Domain cluster: rep: capsid_portal_protein__YP_009342400__Spheniscid_alphaherpesvirus_1__2560777__D434-489

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	46.9	2.10e-12	98.2%	9.3%