←Back to structures

capsid_portal_protein

Euk-Vir

Bovine_alphaherpesvirus_1

capsid_portal_protein__NP_045353__Bovine_alphaherpesvirus_1__10320

Identity

Accession:: NP_045353 ↗
Protein ID:: capsid_portal_protein
Kingdom:: euk

Quality

71.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› bovine_alphaherpesvirus_1

TaxID: 10320

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-53_163-187_219-274

PDB

Domain cluster: rep: putative_viron_protein__NP_050255__Human_betaherpesvirus_6B__32604__D63-87_177-199_238-289

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	36.6	2.60e-09	56.9%	9.9%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2b5uA03	3.10.380.10	Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain	0.61	31.0	3.23e-01	96.3%	51.0%
1z1bA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.58	23.0	3.04e-01	91.7%	64.9%
2jx8A00	2.20.70.10	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.58	21.0	3.10e-01	78.9%	74.5%
1b7tA02	2.30.30.360	Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal	0.57	26.0	3.44e-01	82.6%	82.7%
6bogA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.57	26.0	3.49e-01	85.3%	86.5%
5i4eA01	2.30.30.360	Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal	0.53	23.0	3.24e-01	84.4%	91.3%
2cudA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.52	30.0	3.41e-01	93.6%	75.9%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4930465	4294.1.1.0 ↗	few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like	0.68	34.0	4.47e-01	96.3%	88.3%
3379168	5.1.10.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed	0.64	32.0	4.05e-01	97.2%	81.0%
3509731	71.1.1.19 ↗	beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898	0.57	43.0	3.36e-01	100.0%	38.6%
None	—		0.52	33.0	2.37e-01	99.1%	21.9%
3661053	5.1.5.132 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF7899	0.50	39.0	2.61e-01	82.6%	89.0%

D2 medium residues 68-85_275-311_519-627

PDB

Domain cluster: rep: capsid_portal_protein__YP_009054959__Equid_alphaherpesvirus_3__80341__D89-105_179-264_581-611

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	135.7	2.60e-39	60.4%	17.4%
PF01763.23	Herpes_UL6	55.4	5.60e-15	25.0%	6.8%

D3 medium residues 86-162_188-218

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	46.6	2.60e-12	73.2%	12.6%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1u7lA02	1.20.1460.10	Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2	0.62	52.0	4.28e-01	88.9%	69.9%
3r6nA02	1.20.58.1060	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	43.0	3.87e-01	75.9%	67.1%
1f45B00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.53	44.0	4.11e-01	88.9%	90.2%
4ciuA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	46.0	3.76e-01	94.4%	60.4%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3991599	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.65	45.0	4.66e-01	70.4%	100.0%
3631218	622.4.1.0 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related	0.65	45.0	4.83e-01	81.5%	81.1%
3576407	622.4.1.0 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related	0.60	45.0	4.48e-01	79.6%	73.9%
3762633	4177.1.1.70 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Choline_transpo	0.60	43.0	3.31e-01	75.0%	79.2%
3249030	5042.1.1.0 ↗	extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region	0.60	43.0	3.75e-01	75.0%	52.4%
3716970	603.2.1.0 ↗	alpha bundles › STAT-like › STAT › STAT	0.58	47.0	4.33e-01	84.3%	86.7%
5014863	3755.3.1.524 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › AI-2E_transport	0.58	48.0	3.46e-01	89.8%	89.4%
3579590	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.56	43.0	3.97e-01	80.6%	81.4%
5040175	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.53	37.0	3.61e-01	71.3%	76.5%
4030595	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.52	42.0	3.72e-01	86.1%	59.4%
4971990	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.52	41.0	3.41e-01	84.3%	54.8%
3579763	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.51	39.0	3.87e-01	88.9%	77.3%

D4 medium residues 312-376_504-518

PDB