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capsid_portal_protein
Euk-VirPsittacid_alphaherpesvirus_1
capsid_portal_protein__NP_944434__Psittacid_alphaherpesvirus_1__50294
Identity
- Accession:
- NP_944434 ↗
- Protein ID:
- capsid_portal_protein
- Kingdom:
- euk
Quality
64.2
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Iltovirus›
Psittacid_alphaherpesvirus_1
TaxID: 50294
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-299_577-651
Domain cluster:
rep: U76__NP_042969__Human_betaherpesvirus_6A__32603__D57-282_547-593
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 199.1 | 1.60e-58 | 69.7% | 41.5% |
| PF01763.23 | Herpes_UL6 | 101.0 | 8.30e-29 | 21.4% | 13.4% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h3tA02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.57 | 23.0 | 3.51e-01 | 83.7% | 87.9% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.51 | 27.0 | 3.67e-01 | 89.1% | 99.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5005480 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 19.0 | 2.70e-01 | 70.0% | 52.6% |
| 4601497 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.59 | 24.0 | 3.40e-01 | 83.4% | 74.9% |
| 3290796 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.58 | 25.0 | 3.34e-01 | 86.3% | 71.9% |
| 3719459 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.56 | 21.0 | 2.81e-01 | 73.1% | 60.5% |
| 4094628 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.54 | 24.0 | 3.15e-01 | 82.6% | 69.7% |
| 3970616 | 601.4.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › 4HB_MCP_1 | 0.54 | 25.0 | 3.67e-01 | 70.9% | 100.0% |
| 5003219 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.53 | 28.0 | 3.58e-01 | 90.9% | 85.0% |
| 4941160 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.52 | 28.0 | 3.57e-01 | 91.7% | 86.7% |
| 3420616 | 3684.1.1.2 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 | 0.50 | 30.0 | 3.59e-01 | 81.7% | 85.5% |
D2
medium
residues 366-385_444-498