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capsid_portal_protein
Euk-VirGallid_alphaherpesvirus_2
capsid_portal_protein__YP_001033934__Gallid_alphaherpesvirus_2__10390
Identity
- Accession:
- YP_001033934 ↗
- Protein ID:
- capsid_portal_protein
- Kingdom:
- euk
Quality
71.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Gallid_alphaherpesvirus_2
TaxID: 10390
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 83-170_203-247
Domain cluster:
rep: capsid_portal_protein__NP_045273__Equid_alphaherpesvirus_4__10331__D118-174_201-262
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 66.7 | 2.00e-18 | 69.2% | 14.3% |
D2
medium
residues 326-398
D3
medium
residues 438-487
Domain cluster:
rep: capsid_portal_protein__YP_009342400__Spheniscid_alphaherpesvirus_1__2560777__D434-489
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 43.0 | 3.10e-11 | 100.0% | 8.6% |
D4
medium
residues 519-577
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 91.9 | 4.80e-26 | 100.0% | 10.4% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qlzA02 | 6.10.250.2960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 45.0 | 4.01e-01 | 76.3% | 59.3% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.58 | 42.0 | 3.21e-01 | 76.3% | 52.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5073398 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.61 | 42.0 | 3.19e-01 | 72.9% | 86.7% |
| 5073006 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.57 | 38.0 | 2.94e-01 | 71.2% | 83.7% |
| 4969654 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.54 | 41.0 | 2.69e-01 | 84.7% | 34.4% |
| 3521467 | 3016.1.1.21 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen | 0.54 | 39.0 | 3.46e-01 | 78.0% | 61.1% |