capsid_portal_protein

Euk-Vir

Aotine_betaherpesvirus_1

capsid_portal_protein__YP_004940119__Aotine_betaherpesvirus_1__50290

Identity

74.8 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Aotine_betaherpesvirus_1

TaxID: 50290

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 59-84_164-284

PDB

Domain cluster: rep: JM72__YP_238375__Macaca_fuscata_rhadinovirus__272551__D50-239

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	68.0	8.50e-19	93.9%	23.4%

D2 medium residues 85-163_548-621

PDB

Domain cluster: rep: capsid_portal_protein__YP_081550__Human_betaherpesvirus_5__10359__D90-194_601-636

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	53.6	1.90e-14	53.6%	15.5%
PF01763.23	Herpes_UL6	60.8	1.30e-16	43.1%	11.5%

D3 medium residues 285-316_522-547

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	41.6	8.00e-11	60.3%	6.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3336121	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	41.0	2.41e-01	100.0%	20.7%

D4 medium residues 317-379_503-521

PDB