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capsid_portal_protein
Euk-VirMacropodid_alphaherpesvirus_1
capsid_portal_protein__YP_009227239__Macropodid_alphaherpesvirus_1__137443
Identity
- Accession:
- YP_009227239 ↗
- Protein ID:
- capsid_portal_protein
- Kingdom:
- euk
Quality
74.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Simplexvirus›
Macropodid_alphaherpesvirus_1
TaxID: 137443
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-268_546-616
Domain cluster:
rep: U76__NP_042969__Human_betaherpesvirus_6A__32603__D57-282_547-593
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 214.7 | 3.00e-63 | 74.1% | 40.4% |
| PF01763.23 | Herpes_UL6 | 61.4 | 8.40e-17 | 21.4% | 11.7% |
D2
medium
residues 269-301_514-545
Domain cluster:
rep: capsid_portal_protein__YP_053100__Equid_alphaherpesvirus_1__10326__D312-348_556-585
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 47.8 | 1.10e-12 | 52.3% | 6.0% |
| PF01763.23 | Herpes_UL6 | 42.6 | 4.20e-11 | 50.8% | 6.0% |
D3
medium
residues 302-369_500-513