capsid_portal_protein

Euk-Vir

Canid_alphaherpesvirus_1

capsid_portal_protein__YP_009252280__Canid_alphaherpesvirus_1__170325

Identity

72.2 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Canid_alphaherpesvirus_1

TaxID: 170325

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 65-102_570-625

PDB

Domain cluster: rep: capsid_portal_protein__YP_002333537__Equid_alphaherpesvirus_9__55744__D91-137_619-665

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	34.2	1.50e-08	43.6%	6.8%
PF01763.23	Herpes_UL6	37.9	1.10e-09	41.5%	6.8%

D2 medium residues 151-283_545-569

PDB

Domain cluster: rep: capsid_portal_protein__YP_053100__Equid_alphaherpesvirus_1__10326__D30-103_184-201_268-311_586-623

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	126.8	1.30e-36	86.1%	23.6%

D3 medium residues 284-306_517-544

PDB

Domain cluster: rep: capsid_portal_protein__YP_053100__Equid_alphaherpesvirus_1__10326__D312-348_556-585

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	38.2	8.90e-10	54.9%	4.9%

D4 medium residues 324-377

PDB

D5 medium residues 412-472

PDB

Domain cluster: rep: capsid_portal_protein__YP_009342400__Spheniscid_alphaherpesvirus_1__2560777__D434-489

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	54.6	9.40e-15	100.0%	11.0%