←Back to structures

capsid_portal_protein

Euk-Vir

Columbid_alphaherpesvirus_1

capsid_portal_protein__YP_009352910__Columbid_alphaherpesvirus_1__93386

Identity

Accession:: YP_009352910 ↗
Protein ID:: capsid_portal_protein
Kingdom:: euk

Quality

65.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Columbid_alphaherpesvirus_1

TaxID: 93386

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 80-101_198-227_260-371

PDB

Domain cluster: rep: capsid_portal_protein__YP_053100__Equid_alphaherpesvirus_1__10326__D30-103_184-201_268-311_586-623

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	152.8	1.70e-44	94.5%	27.1%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3705154	64.1.1.1 ↗	beta meanders › WW domain-like › WW domain › WW domain › WW	0.73	17.0	3.55e-01	73.2%	80.0%
3935682	64.1.1.1 ↗	beta meanders › WW domain-like › WW domain › WW domain › WW	0.66	24.0	4.08e-01	76.8%	93.3%
4945596	4325.1.1.0 ↗	mixed a+b and a/b › YegP-like › YegP-like › YegP-like	0.66	17.0	3.25e-01	73.8%	77.8%
4930465	4294.1.1.0 ↗	few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like	0.66	21.0	3.55e-01	81.1%	80.0%
3715091	64.1.1.0 ↗	beta meanders › WW domain-like › WW domain › WW domain	0.60	22.0	3.61e-01	92.1%	87.7%
3947081	4210.1.1.0 ↗	a+b two layers › WGR domain › WGR domain › WGR domain	0.57	21.0	3.33e-01	84.1%	84.4%
4034031	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.57	25.0	3.72e-01	78.7%	100.0%
3702861	375.1.1.19 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD	0.55	22.0	3.33e-01	82.3%	96.4%
3208203	375.1.1.19 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD	0.52	21.0	3.13e-01	70.7%	96.4%
1277880	64.1.1.1 ↗	beta meanders › WW domain-like › WW domain › WW domain › WW	0.52	21.0	3.28e-01	81.1%	96.8%
3605879	64.1.1.0 ↗	beta meanders › WW domain-like › WW domain › WW domain	0.52	17.0	3.06e-01	75.6%	100.0%
3709555	64.1.1.1 ↗	beta meanders › WW domain-like › WW domain › WW domain › WW	0.51	14.0	2.50e-01	93.9%	72.7%
4468802	101.15.1.0 ↗	alpha arrays › HTH › LysM domain › LysM domain	0.50	24.0	3.24e-01	86.6%	89.9%

D2 medium residues 102-197_636-704

PDB

Domain cluster: rep: capsid_portal_protein__NP_040176__Human_alphaherpesvirus_3__10335__D97-193_213-262_618-655

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	94.6	7.20e-27	59.4%	16.4%
PF01763.23	Herpes_UL6	65.9	3.50e-18	38.8%	10.8%

D3 medium residues 485-535

PDB

Domain cluster: rep: capsid_portal_protein__YP_009342400__Spheniscid_alphaherpesvirus_1__2560777__D434-489

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	41.6	8.10e-11	100.0%	8.6%