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capsid_portal_protein
Euk-VirBeluga_whale_alphaherpesvirus_1
capsid_portal_protein__YP_010084985__Beluga_whale_alphaherpesvirus_1__1434720
Identity
- Accession:
- YP_010084985 ↗
- Protein ID:
- capsid_portal_protein
- Kingdom:
- euk
Quality
72.7
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Beluga_whale_alphaherpesvirus_1
TaxID: 1434720
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 24-81_153-312_516-597
Domain cluster:
rep: U76__NP_042969__Human_betaherpesvirus_6A__32603__D57-282_547-593
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 170.3 | 8.20e-50 | 56.0% | 28.1% |
| PF01763.23 | Herpes_UL6 | 111.2 | 6.70e-32 | 27.3% | 14.3% |
| PF01763.23 | Herpes_UL6 | 45.4 | 5.70e-12 | 15.3% | 7.9% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pv4A00 | 1.10.3440.10 | Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like | 0.59 | 24.0 | 3.42e-01 | 90.7% | 75.2% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 20.0 | 3.38e-01 | 79.3% | 85.4% |
| 2l7nA00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.56 | 21.0 | 2.74e-01 | 91.3% | 56.0% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 21.0 | 2.90e-01 | 80.7% | 63.3% |
| 3owaB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 24.0 | 3.37e-01 | 94.0% | 79.6% |
| 3gnlB02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 12.0 | 2.81e-01 | 82.7% | 92.6% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3702509 | 632.1.1.11 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › HYOU1_C | 0.62 | 19.0 | 3.69e-01 | 78.7% | 96.5% |
| 3255531 | 632.7.1.25 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 | 0.58 | 19.0 | 3.54e-01 | 80.3% | 98.8% |
| 4602773 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.56 | 27.0 | 3.93e-01 | 88.7% | 100.0% |
| 4591574 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.53 | 22.0 | 3.40e-01 | 79.7% | 95.7% |
| 4025598 | 327.11.2.33 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DEAH11_2nd | 0.50 | 17.0 | 2.95e-01 | 78.3% | 100.0% |
D2
medium
residues 82-152_598-622
Domain cluster:
rep: capsid_portal_protein__YP_002333537__Equid_alphaherpesvirus_9__55744__D91-137_619-665
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 37.5 | 1.40e-09 | 88.5% | 12.8% |
D3
medium
residues 313-332_345-378