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capsid_portal_protein
Euk-VirWood_mouse_herpesvirus
capsid_portal_protein__YP_010085917__Wood_mouse_herpesvirus__432370
Identity
- Accession:
- YP_010085917 ↗
- Protein ID:
- capsid_portal_protein
- Kingdom:
- euk
Quality
76.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Rhadinovirus›
Wood_mouse_herpesvirus
TaxID: 432370
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 46-125_157-195_526-553
Domain cluster:
rep: capsid_portal_protein__YP_081550__Human_betaherpesvirus_5__10359__D90-194_601-636
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 61.1 | 1.10e-16 | 59.2% | 14.6% |
D2
medium
residues 126-156_196-241_498-514
Domain cluster:
rep: putative_viron_protein__NP_050255__Human_betaherpesvirus_6B__32604__D63-87_177-199_238-289
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 36.8 | 2.40e-09 | 64.9% | 9.7% |
| PF01763.23 | Herpes_UL6 | 27.4 | 1.70e-06 | 31.9% | 4.8% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zgzD04 | 2.20.28.290 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.60 | 37.0 | 4.30e-01 | 84.0% | 91.9% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 26.0 | 3.68e-01 | 79.8% | 94.9% |
| 3kdrA02 | 3.40.140.120 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › | 0.55 | 49.0 | 4.46e-01 | 100.0% | 78.0% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.51 | 32.0 | 3.82e-01 | 74.5% | 96.8% |
| 4akmB00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 42.0 | 3.61e-01 | 92.6% | 85.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3661622 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.64 | 28.0 | 4.10e-01 | 81.9% | 95.0% |
| 4335061 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.64 | 35.0 | 4.43e-01 | 71.3% | 98.0% |
| 4205352 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.62 | 34.0 | 4.32e-01 | 75.5% | 100.0% |
| 3190898 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.60 | 27.0 | 3.90e-01 | 86.2% | 97.5% |
| 4044129 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.60 | 34.0 | 4.05e-01 | 74.5% | 86.7% |
| 3928448 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.58 | 26.0 | 3.53e-01 | 85.1% | 84.4% |
| 3403173 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.58 | 25.0 | 3.59e-01 | 87.2% | 100.0% |
| 3205074 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 31.0 | 3.82e-01 | 89.4% | 94.0% |
| 3605879 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.56 | 28.0 | 3.67e-01 | 80.9% | 95.6% |
| 3627795 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 34.0 | 3.58e-01 | 76.6% | 68.2% |
| 4999659 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 29.0 | 3.58e-01 | 83.0% | 95.8% |
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.51 | 34.0 | 4.03e-01 | 76.6% | 100.0% |
| 3924468 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 32.0 | 2.25e-01 | 86.2% | 18.2% |
| 3942998 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.51 | 35.0 | 3.99e-01 | 72.3% | 100.0% |
| 3404585 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 24.0 | 3.09e-01 | 96.8% | 82.0% |
| 3665481 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.50 | 27.0 | 3.31e-01 | 88.3% | 100.0% |
D3
medium
residues 242-274_456-497
Domain cluster:
rep: capsid_portal_protein__YP_053100__Equid_alphaherpesvirus_1__10326__D312-348_556-585
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 41.9 | 6.90e-11 | 56.0% | 7.7% |
| PF01763.23 | Herpes_UL6 | 45.6 | 4.90e-12 | 46.7% | 6.0% |
D4
medium
residues 275-295_415-455