capsid_portal_protein

Euk-Vir

Equid_alphaherpesvirus_1

capsid_portal_protein__YP_053100__Equid_alphaherpesvirus_1__10326

Identity

68.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_1

TaxID: 10326

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-103_184-201_268-311_586-623

PDB

Domain cluster: representative

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	31.8	7.50e-08	26.4%	7.7%
PF01763.23	Herpes_UL6	44.3	1.30e-11	23.6%	7.1%
PF01763.23	Herpes_UL6	35.4	6.10e-09	21.8%	6.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3438927	5.1.10.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed	0.54	19.0	3.40e-01	77.0%	96.7%
4777175	5.1.2.4 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL	0.51	24.0	3.36e-01	81.0%	92.7%
3591534	881.1.1.0 ↗	a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like	0.51	24.0	2.79e-01	90.8%	59.2%

D2 medium residues 104-183

PDB

Domain cluster: rep: capsid_portal_protein__YP_009054959__Equid_alphaherpesvirus_3__80341__D106-178

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	60.1	2.00e-16	100.0%	13.0%

D3 medium residues 202-267

PDB

D4 medium residues 312-348_556-585

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	53.1	2.60e-14	62.7%	7.0%
PF01763.23	Herpes_UL6	38.5	7.10e-10	46.3%	5.3%