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capsid_portal_protein
Euk-VirSuid_alphaherpesvirus_1
capsid_portal_protein__YP_068370__Suid_alphaherpesvirus_1__10345
Identity
- Accession:
- YP_068370 ↗
- Protein ID:
- capsid_portal_protein
- Kingdom:
- euk
Quality
73.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Suid_alphaherpesvirus_1
TaxID: 10345
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 26-68_151-264_554-578
Domain cluster:
rep: capsid_portal_protein__YP_053100__Equid_alphaherpesvirus_1__10326__D30-103_184-201_268-311_586-623
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 97.7 | 8.60e-28 | 64.8% | 21.0% |
| PF01763.23 | Herpes_UL6 | 27.9 | 1.20e-06 | 15.9% | 4.9% |
D2
medium
residues 69-150_579-607
Domain cluster:
rep: capsid_portal_protein__YP_002333537__Equid_alphaherpesvirus_9__55744__D91-137_619-665
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 64.7 | 8.60e-18 | 82.0% | 14.3% |
D3
medium
residues 316-363_389-431