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capsid_portal_protein

Euk-Vir

Human_betaherpesvirus_5

capsid_portal_protein__YP_081550__Human_betaherpesvirus_5__10359

Identity

Accession:: YP_081550 ↗
Protein ID:: capsid_portal_protein
Kingdom:: euk

Quality

73.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Human_betaherpesvirus_5

TaxID: 10359

Cluster

View cluster (76 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-89_237-316

PDB

Domain cluster: rep: capsid_portal_protein__YP_007969771__Elephantid_betaherpesvirus_1__146015__D20-46_218-259_441-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	80.2	1.70e-22	68.1%	14.4%

D2 medium residues 90-194_601-636

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	88.1	6.90e-25	75.2%	19.9%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2b8iA00	1.20.1280.100	Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain	0.61	27.0	3.52e-01	82.3%	74.0%
3tbiB02	6.10.140.1670	Special › Helix non-globular › Helix Hairpins ›	0.60	39.0	4.65e-01	70.9%	93.0%
6tqpA01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.60	31.0	3.24e-01	87.9%	50.0%
4uf1A00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.56	30.0	3.09e-01	92.2%	51.1%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.56	35.0	3.90e-01	90.1%	79.1%
4lwsA00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.55	31.0	3.60e-01	84.4%	75.0%
3rv0C02	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.55	35.0	3.56e-01	79.4%	62.5%
1fpoC02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.54	29.0	3.59e-01	75.2%	82.4%
2d2sA01	1.20.58.1210	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain	0.53	28.0	3.08e-01	94.3%	62.1%
1t6jA03	1.10.274.20	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3	0.53	34.0	3.85e-01	94.3%	86.4%
6i3mE01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.53	37.0	3.80e-01	92.2%	74.5%
4g1tA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	26.0	2.76e-01	86.5%	49.6%
2lm9A00	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	32.0	3.80e-01	79.4%	90.6%
4ioeA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.51	30.0	3.74e-01	73.0%	96.6%
3icxA01	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.51	28.0	3.64e-01	70.2%	100.0%
3syvA01	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.50	46.0	3.82e-01	100.0%	87.3%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5055292	5041.1.1.54 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › FtsX	0.62	40.0	4.84e-01	70.9%	96.8%
3954868	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.61	56.0	4.94e-01	100.0%	81.0%
3609431	1075.1.2.12 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › EMP70	0.60	47.0	4.33e-01	95.0%	64.4%
5070677	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.58	52.0	5.09e-01	95.7%	92.7%
3471901	3640.1.1.0 ↗	alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain	0.58	42.0	4.72e-01	92.2%	100.0%
4933903	5079.1.1.1 ↗	alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE	0.57	44.0	4.07e-01	93.6%	62.7%
5047526	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.56	51.0	4.28e-01	100.0%	68.2%
3440120	109.4.1.939 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_C	0.56	26.0	3.04e-01	86.5%	58.9%
4959108	5054.1.1.2 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans	0.55	37.0	3.04e-01	71.6%	38.8%
3710041	3615.1.1.0 ↗	alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain	0.55	46.0	3.88e-01	89.4%	87.2%
4033489	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.53	46.0	4.14e-01	94.3%	81.5%
3178080	854.1.1.4 ↗	extended segments › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE › PRM1	0.53	37.0	3.25e-01	72.3%	51.9%
3826	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.51	29.0	3.47e-01	76.6%	80.8%
5033487	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.51	38.0	3.73e-01	91.5%	72.0%

D3 medium residues 195-236_578-600

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2aplA01	1.10.8.330	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like	0.66	47.0	4.68e-01	76.9%	72.1%
2qgsB01	1.10.472.50	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like	0.58	47.0	4.28e-01	89.2%	100.0%
4cqiA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	35.0	3.05e-01	72.3%	40.2%
2o5iN07	1.10.132.30	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain	0.53	39.0	3.27e-01	78.5%	63.8%
3ddhA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.53	35.0	3.38e-01	81.5%	56.8%
4ecgA00	1.20.1420.20	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif	0.52	40.0	2.54e-01	86.2%	21.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3641386	198.1.1.3 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1	0.57	40.0	3.72e-01	76.9%	57.6%
5070526	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.54	39.0	3.36e-01	78.5%	75.9%

D4 medium residues 431-480

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	43.1	2.80e-11	100.0%	9.1%