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capsid_portal_protein
Euk-VirHuman_gammaherpesvirus_4
capsid_portal_protein__YP_401682__Human_gammaherpesvirus_4__10376
Identity
- Accession:
- YP_401682 ↗
- Protein ID:
- capsid_portal_protein
- Kingdom:
- euk
Quality
74.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Lymphocryptovirus›
human_gammaherpesvirus_4
TaxID: 10376
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 16-55_137-149_242-280_486-497
Domain cluster:
rep: ORF43__YP_009173919__Felis_catus_gammaherpesvirus_1__1452540__D36-48_240-270_456-502
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 51.4 | 9.10e-14 | 39.4% | 6.8% |
| PF01763.23 | Herpes_UL6 | 27.9 | 1.20e-06 | 26.9% | 4.8% |
D2
medium
residues 56-136_540-573
Domain cluster:
rep: UL6__YP_010087410__Vombatid_gammaherpesvirus_1__2052651__D59-122_524-553
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 74.1 | 1.20e-20 | 73.9% | 14.6% |
D3
medium
residues 150-241
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 42.9 | 3.40e-11 | 100.0% | 16.8% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.80 | 45.0 | 5.85e-01 | 81.5% | 100.0% |
| 3zgzD04 | 2.20.28.290 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.69 | 37.0 | 4.34e-01 | 97.8% | 75.8% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 30.0 | 4.06e-01 | 97.8% | 92.9% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 27.0 | 3.85e-01 | 95.7% | 89.7% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.62 | 46.0 | 3.62e-01 | 77.2% | 71.7% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 37.0 | 4.22e-01 | 82.6% | 93.5% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 34.0 | 4.03e-01 | 80.4% | 84.6% |
| 1kf6C00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.56 | 34.0 | 3.06e-01 | 83.7% | 42.3% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 34.0 | 3.76e-01 | 81.5% | 75.7% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 39.0 | 3.65e-01 | 88.0% | 61.1% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 38.0 | 3.97e-01 | 82.6% | 85.5% |
| 1qguB04 | 1.20.89.10 | Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 | 0.51 | 38.0 | 3.95e-01 | 79.3% | 98.8% |
| 2qbyB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 27.0 | 2.67e-01 | 71.7% | 45.1% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4335061 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.66 | 35.0 | 4.46e-01 | 97.8% | 94.0% |
| 4071066 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.64 | 34.0 | 4.49e-01 | 84.8% | 96.0% |
| 3927560 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.61 | 34.0 | 4.14e-01 | 73.9% | 85.0% |
| 3854287 | 611.12.1.4 ↗ | alpha bundles › N-cbl like › Izumo sperm-egg fusion protein 1 N-terminal domain › Izumo sperm-egg fusion protein 1 N-terminal domain › PF31275 | 0.60 | 52.0 | 4.54e-01 | 96.7% | 67.6% |
| 4944453 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.55 | 34.0 | 3.49e-01 | 96.7% | 63.3% |
| 3430171 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 42.0 | 2.67e-01 | 82.6% | 26.3% |
| 3627795 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 32.0 | 3.33e-01 | 100.0% | 64.7% |
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.52 | 35.0 | 4.05e-01 | 100.0% | 96.9% |
| 3838686 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.52 | 33.0 | 3.81e-01 | 87.0% | 98.3% |
| 3927052 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.50 | 33.0 | 3.05e-01 | 100.0% | 53.9% |