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capsid_protein_-CP-
Euk-VirGrapevine_Bulgarian_latent_virus
capsid_protein_-CP-__YP_004429257__Grapevine_Bulgarian_latent_virus__748667
Identity
- Accession:
- YP_004429257 ↗
- Protein ID:
- capsid_protein_-CP-
- Kingdom:
- euk
Quality
77.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Picornavirales›
Secoviridae›
Nepovirus›
Grapevine_Bulgarian_latent_virus
TaxID: 748667
Cluster
View cluster (41 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 342-499
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03688.21 best | Nepo_coat_C | 128.3 | 3.80e-37 | 100.0% | 95.1% |
CATH (67)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y26A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.84 | 77.0 | 7.64e-01 | 100.0% | 93.2% |
| 1a6cA02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.82 | 76.0 | 7.48e-01 | 100.0% | 92.7% |
| 1pgl100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 74.0 | 7.00e-01 | 100.0% | 89.7% |
| 7chkB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 59.0 | 6.45e-01 | 98.7% | 100.0% |
| 8b38A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 65.0 | 5.75e-01 | 99.4% | 92.0% |
| 3afgA03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 44.0 | 5.35e-01 | 99.4% | 97.1% |
| 1b35C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 63.0 | 5.18e-01 | 100.0% | 66.3% |
| 2ws9100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 64.0 | 5.44e-01 | 100.0% | 74.4% |
| 2xbzA00 | 2.60.40.2380 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 43.0 | 4.73e-01 | 97.5% | 76.5% |
| 5mqcC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 63.0 | 5.26e-01 | 100.0% | 71.2% |
| 2ws9300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 61.0 | 5.39e-01 | 100.0% | 74.8% |
| 5ewnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 61.0 | 5.82e-01 | 100.0% | 94.0% |
| 2gh8A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 61.0 | 5.56e-01 | 100.0% | 77.2% |
| 5aooC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 61.0 | 5.42e-01 | 100.0% | 75.5% |
| 3cjiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 60.0 | 5.23e-01 | 100.0% | 75.6% |
| 2q1mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 47.0 | 5.38e-01 | 97.5% | 100.0% |
| 1tme300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 60.0 | 5.31e-01 | 100.0% | 74.8% |
| 1wcdJ01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 59.0 | 4.91e-01 | 100.0% | 75.8% |
| 4rs5A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 60.0 | 5.32e-01 | 100.0% | 78.3% |
| 2tbvA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 59.0 | 4.81e-01 | 100.0% | 55.2% |
| 4qpiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 58.0 | 5.23e-01 | 100.0% | 71.9% |
| 6sk6A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 59.0 | 4.88e-01 | 100.0% | 66.7% |
| 4llfD01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 58.0 | 5.64e-01 | 100.0% | 90.4% |
| 1bev100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 58.0 | 4.88e-01 | 100.0% | 63.8% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 52.0 | 5.51e-01 | 95.6% | 99.3% |
| 3jb4C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 58.0 | 5.02e-01 | 100.0% | 68.5% |
| 1e57B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 54.0 | 5.19e-01 | 100.0% | 80.3% |
| 1yi9A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 44.0 | 4.65e-01 | 98.7% | 81.8% |
| 6mrmC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 57.0 | 5.61e-01 | 100.0% | 94.7% |
| 1auyB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 54.0 | 5.14e-01 | 100.0% | 78.8% |
| 2wq4A01 | 2.60.120.760 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 48.0 | 5.29e-01 | 96.8% | 100.0% |
| 5e1qA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.62 | 36.0 | 4.43e-01 | 85.4% | 92.7% |
| 1kxgA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 51.0 | 5.35e-01 | 96.8% | 98.6% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 50.0 | 5.15e-01 | 98.1% | 95.2% |
| 1s55A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 53.0 | 5.34e-01 | 98.7% | 96.8% |
| 3l5hA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 30.0 | 4.02e-01 | 83.5% | 94.9% |
| 2crmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 30.0 | 4.00e-01 | 94.9% | 94.9% |
| 2df7A02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.59 | 48.0 | 5.04e-01 | 99.4% | 96.4% |
| 1dg6A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 51.0 | 5.25e-01 | 97.5% | 98.7% |
| 1yi9A01 | 2.60.120.310 | Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain | 0.58 | 48.0 | 4.84e-01 | 97.5% | 88.5% |
| 4zelB01 | 2.60.120.310 | Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain | 0.58 | 48.0 | 5.03e-01 | 97.5% | 97.9% |
| 2q7nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 35.0 | 4.08e-01 | 97.5% | 85.5% |
| 1kshB00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.58 | 41.0 | 4.33e-01 | 100.0% | 81.7% |
| 1zldA00 | 2.60.40.1920 | Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA | 0.57 | 36.0 | 4.39e-01 | 79.7% | 98.0% |
| 4xurA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 50.0 | 5.04e-01 | 96.2% | 100.0% |
| 4xuoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 50.0 | 5.04e-01 | 98.1% | 96.8% |
| 2je8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 35.0 | 4.27e-01 | 89.2% | 98.0% |
| 2w5fB01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 48.0 | 4.97e-01 | 96.8% | 97.4% |
| 6mfaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 30.0 | 3.88e-01 | 93.0% | 100.0% |
| 6oauA02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.55 | 34.0 | 3.81e-01 | 75.9% | 78.7% |
| 4gucA00 | 2.60.40.3720 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 34.0 | 3.97e-01 | 91.1% | 86.1% |
| 1dyoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 48.0 | 4.89e-01 | 96.8% | 96.2% |
| 2xomA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 47.0 | 4.96e-01 | 96.2% | 100.0% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 44.0 | 4.66e-01 | 95.6% | 97.8% |
| 3m1hD00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 48.0 | 4.63e-01 | 96.2% | 100.0% |
| 1djxA03 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 37.0 | 3.96e-01 | 70.3% | 98.5% |
| 4kkpA02 | 2.60.40.3880 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 4.27e-01 | 96.2% | 100.0% |
| 2c9aA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 47.0 | 4.72e-01 | 98.1% | 96.3% |
| 2orzA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 44.0 | 4.47e-01 | 99.4% | 93.1% |
| 2orzA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 45.0 | 4.60e-01 | 99.4% | 97.4% |
| 2dmgA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 38.0 | 3.98e-01 | 96.2% | 84.5% |
| 6r3mA01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.51 | 46.0 | 4.55e-01 | 96.8% | 98.2% |
| 5y4mA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 44.0 | 4.53e-01 | 98.7% | 98.0% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 31.0 | 3.78e-01 | 83.5% | 96.9% |
| 2fauA01 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 43.0 | 4.46e-01 | 93.7% | 98.7% |
| 5u8rA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 34.0 | 3.92e-01 | 92.4% | 100.0% |
| 4pt6A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 44.0 | 4.46e-01 | 98.7% | 97.4% |
ECOD (73)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 143450 | 10.2.1.37 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_C | 0.84 | 77.0 | 7.64e-01 | 100.0% | 93.2% |
| 1216 | 10.2.1.37 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_C | 0.82 | 76.0 | 7.48e-01 | 100.0% | 92.7% |
| 1720475 | 10.2.1.25 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Como_SCP | 0.79 | 75.0 | 6.87e-01 | 100.0% | 82.7% |
| 1220 | 10.2.1.25 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Como_SCP | 0.79 | 74.0 | 7.00e-01 | 100.0% | 89.7% |
| 1866052 | 10.2.1.44 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid | 0.73 | 64.0 | 5.78e-01 | 100.0% | 70.7% |
| 5039035 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.71 | 44.0 | 5.45e-01 | 93.0% | 100.0% |
| 3742116 | 10.32.1.72 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD | 0.70 | 49.0 | 5.67e-01 | 96.8% | 98.3% |
| 3478158 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.70 | 48.0 | 5.36e-01 | 96.8% | 88.8% |
| 4814721 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.69 | 62.0 | 5.70e-01 | 100.0% | 75.7% |
| 4835076 | 10.2.1.44 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid | 0.68 | 57.0 | 5.37e-01 | 88.6% | 93.8% |
| 3686285 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.68 | 48.0 | 5.48e-01 | 98.1% | 98.3% |
| 1694889 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.68 | 57.0 | 5.17e-01 | 100.0% | 67.0% |
| 4900996 | 10.2.1.88 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv, Calici_coat | 0.67 | 55.0 | 5.22e-01 | 91.1% | 73.4% |
| 4219528 | 10.2.1.55 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL | 0.67 | 46.0 | 5.21e-01 | 100.0% | 93.9% |
| 4468775 | 10.2.1.55 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL | 0.67 | 42.0 | 5.11e-01 | 98.1% | 100.0% |
| 1696117 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.66 | 60.0 | 5.68e-01 | 100.0% | 83.7% |
| 31099 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.65 | 60.0 | 5.31e-01 | 100.0% | 74.8% |
| 2982737 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.65 | 60.0 | 4.95e-01 | 100.0% | 71.2% |
| 3392961 | 10.2.1.31 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin | 0.65 | 47.0 | 5.27e-01 | 100.0% | 97.5% |
| 2006903 | 10.2.1.44 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid | 0.65 | 60.0 | 4.90e-01 | 100.0% | 62.9% |
| 1400716 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.64 | 58.0 | 5.23e-01 | 100.0% | 71.9% |
| 5050550 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.64 | 47.0 | 5.30e-01 | 93.7% | 100.0% |
| 1758310 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.64 | 58.0 | 5.37e-01 | 100.0% | 77.5% |
| 2414126 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.64 | 58.0 | 5.07e-01 | 100.0% | 69.7% |
| 1412423 | 10.32.1.72 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD | 0.64 | 46.0 | 5.12e-01 | 95.6% | 93.7% |
| 1697855 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.63 | 58.0 | 5.02e-01 | 100.0% | 68.5% |
| 3898740 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.63 | 51.0 | 5.47e-01 | 98.1% | 98.6% |
| 296002 | 10.2.1.15 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat | 0.62 | 54.0 | 5.13e-01 | 100.0% | 78.3% |
| 3526189 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.62 | 51.0 | 5.28e-01 | 95.6% | 92.7% |
| 3908007 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.61 | 53.0 | 5.43e-01 | 97.5% | 97.3% |
| 3936599 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.61 | 52.0 | 5.40e-01 | 97.5% | 97.9% |
| 3881289 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.61 | 53.0 | 5.34e-01 | 98.1% | 92.5% |
| 3168473 | 10.32.1.306 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF30096 | 0.61 | 55.0 | 5.18e-01 | 97.5% | 97.4% |
| 4003316 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.60 | 42.0 | 4.71e-01 | 93.0% | 92.0% |
| 2710690 | 10.2.1.29 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid | 0.59 | 54.0 | 5.01e-01 | 99.4% | 88.6% |
| 3927415 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 35.0 | 4.24e-01 | 82.3% | 90.4% |
| 3266593 | 11.2.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 | 0.58 | 40.0 | 3.97e-01 | 70.3% | 92.9% |
| 3906314 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.58 | 52.0 | 5.27e-01 | 96.8% | 98.7% |
| 3256321 | 11.2.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 | 0.58 | 40.0 | 4.31e-01 | 70.3% | 99.3% |
| 3531351 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.58 | 52.0 | 4.55e-01 | 98.7% | 86.3% |
| 4388794 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 40.0 | 4.35e-01 | 88.6% | 85.4% |
| 3932049 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.57 | 47.0 | 4.54e-01 | 98.1% | 78.3% |
| 3921479 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.57 | 52.0 | 4.65e-01 | 98.7% | 78.6% |
| 3756345 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.57 | 52.0 | 5.18e-01 | 100.0% | 97.5% |
| 4186200 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.57 | 51.0 | 4.95e-01 | 96.8% | 93.7% |
| 3392540 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.57 | 51.0 | 4.82e-01 | 98.1% | 89.5% |
| 4025348 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 49.0 | 4.98e-01 | 94.3% | 100.0% |
| 3914225 | 10.32.1.283 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TGFb_propeptide | 0.56 | 44.0 | 4.68e-01 | 90.5% | 96.3% |
| 4135250 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.56 | 50.0 | 3.88e-01 | 98.7% | 61.7% |
| 4270868 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.55 | 47.0 | 4.31e-01 | 98.1% | 69.5% |
| 3753133 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.55 | 50.0 | 3.87e-01 | 98.1% | 47.4% |
| 3867993 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.55 | 50.0 | 4.59e-01 | 98.7% | 92.7% |
| 4249886 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.55 | 50.0 | 4.46e-01 | 98.7% | 82.3% |
| 3894765 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.55 | 36.0 | 3.90e-01 | 73.4% | 79.2% |
| 4593672 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.55 | 49.0 | 4.98e-01 | 98.7% | 98.1% |
| 5055872 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 48.0 | 4.88e-01 | 98.7% | 96.1% |
| 3746356 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.54 | 45.0 | 4.04e-01 | 98.1% | 61.7% |
| 3307805 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.54 | 49.0 | 4.84e-01 | 98.1% | 94.1% |
| 3413120 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.54 | 49.0 | 4.43e-01 | 99.4% | 94.0% |
| 3902712 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.54 | 48.0 | 4.45e-01 | 98.1% | 79.0% |
| 3886215 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.54 | 45.0 | 4.49e-01 | 98.7% | 87.3% |
| 4943628 | 11.1.1.1397 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2_C | 0.53 | 35.0 | 4.06e-01 | 83.5% | 93.6% |
| None | — | 0.53 | 44.0 | 3.76e-01 | 98.1% | 53.3% | |
| 3830721 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.53 | 42.0 | 2.97e-01 | 97.5% | 26.9% |
| 3382614 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 42.0 | 2.89e-01 | 98.7% | 24.6% |
| 3307728 | 10.32.1.192 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID | 0.52 | 42.0 | 4.22e-01 | 97.5% | 84.4% |
| 3822933 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.52 | 44.0 | 3.06e-01 | 96.8% | 27.4% |
| 5005245 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 43.0 | 3.87e-01 | 91.1% | 95.7% |
| 4426314 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 43.0 | 4.50e-01 | 94.9% | 97.9% |
| 5039260 | 11.1.1.1424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 | 0.51 | 35.0 | 4.02e-01 | 92.4% | 95.7% |
| 4941303 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.75e-01 | 94.9% | 83.1% |
| 3198474 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.50 | 39.0 | 4.22e-01 | 98.1% | 97.7% |
| 3810286 | 10.32.1.192 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID | 0.50 | 42.0 | 3.93e-01 | 98.1% | 72.3% |
D2
medium
residues 1-156
Domain cluster:
rep: hypothetical_protein_2__YP_009333484__Beihai_picorna-like_virus_58__1922603__D2-145
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03689.22 best | Nepo_coat_N | 87.0 | 9.30e-25 | 55.8% | 92.3% |
D3
medium
residues 157-338
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03391.22 best | Nepo_coat | 92.8 | 2.30e-26 | 92.9% | 98.8% |