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capsid_protein_1
Euk-VirAcanthamoeba_polyphaga_mimivirus
capsid_protein_1__YP_003986929__Acanthamoeba_polyphaga_mimivirus__212035
Identity
- Accession:
- YP_003986929 ↗
- Protein ID:
- capsid_protein_1
- Kingdom:
- euk
Quality
68.2
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Mimivirus›
Acanthamoeba_polyphaga_mimivirus
TaxID: 212035
Cluster
View cluster (126 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-83_104-144_172-202_225-260
Domain cluster:
rep: major_capsid_protein__YP_009508644__Common_midwife_toad_virus__540070__D48-85_114-155_177-212_243-266
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16903.13 best | Capsid_N | 130.1 | 1.20e-37 | 79.9% | 74.9% |
D2
medium
residues 84-103_145-171_203-224
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ufiA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.50 | 42.0 | 3.40e-01 | 98.6% | 77.8% |
D3
medium
residues 261-292_478-593
Domain cluster:
rep: putative_capsid_protein_4__YP_003969808__Cafeteria_roenbergensis_virus_BV-PW1__693272__D326-494
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04451.18 best | Capsid_NCLDV | 134.0 | 7.90e-39 | 77.0% | 60.7% |
D4
medium
residues 293-323_458-477