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capsid_protein_1
Euk-VirHuman_parvovirus_B19
capsid_protein_1__YP_004928146__Human_parvovirus_B19__10798
Identity
- Accession:
- YP_004928146 ↗
- Protein ID:
- capsid_protein_1
- Kingdom:
- euk
Quality
59.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Erythroparvovirus›
Human_parvovirus_B19
TaxID: 10798
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 249-352_401-461_716-733
Domain cluster:
rep: capsid_protein_2__YP_004928148__Human_parvovirus_B19__10798__D22-40_52-122_172-219
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 151.4 | 4.60e-44 | 57.4% | 19.8% |
| PF00740.24 | VP1_2 | 88.5 | 5.50e-25 | 37.2% | 12.8% |
D2
medium
residues 353-400_668-715
Domain cluster:
rep: VP1_VP2__YP_009553052__Rousettus_leschenaultii_bocaparvovirus_1__2053082__D261-317_596-621
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 61.2 | 1.00e-16 | 53.1% | 9.3% |
| PF00740.24 | VP1_2 | 45.1 | 7.70e-12 | 53.1% | 8.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g8gA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.90 | 86.0 | 5.18e-01 | 100.0% | 70.8% |
| 1c8dA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.87 | 82.0 | 4.95e-01 | 100.0% | 70.1% |
| 1d0nA05 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.68 | 30.0 | 3.01e-01 | 97.9% | 39.6% |
| 1qgwA00 | 3.90.510.10 | Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain | 0.55 | 29.0 | 3.22e-01 | 74.0% | 63.2% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 32.0 | 2.94e-01 | 99.0% | 47.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2990572 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.92 | 88.0 | 5.26e-01 | 100.0% | 71.2% |
| 2644354 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.90 | 86.0 | 5.18e-01 | 100.0% | 70.8% |
| 3107798 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.88 | 83.0 | 5.00e-01 | 100.0% | 71.2% |
| 4884619 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.86 | 82.0 | 4.91e-01 | 100.0% | 68.5% |
| 2707659 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.85 | 81.0 | 4.90e-01 | 100.0% | 66.5% |
| 3583548 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 37.0 | 4.00e-01 | 100.0% | 76.2% |
| 4248513 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 34.0 | 3.13e-01 | 99.0% | 49.2% |