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capsid_protein_2

Euk-Vir

Mink_bocavirus_1

capsid_protein_2__YP_009272916__Mink_bocavirus_1__2259808

Identity

Accession:
YP_009272916 ↗
Protein ID:
capsid_protein_2
Kingdom:
euk

Quality

77.0 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Mink_bocavirus_1

TaxID: 2259808

Cluster

View cluster (92 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-74_101-120_387-414_449-577
PDB
Domain cluster: rep: VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554__D51-253_470-529
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.94 92.0 6.55e-01 100.0% 97.6%
2g8gA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.89 86.0 6.13e-01 100.0% 97.1%
1c8dA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.85 82.0 5.76e-01 100.0% 97.8%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 21.0 3.10e-01 75.1% 84.6%
1sznA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 21.0 2.94e-01 98.5% 75.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3107798 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.97 96.0 6.68e-01 100.0% 97.4%
2707659 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.96 94.0 6.62e-01 100.0% 95.6%
2644354 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.89 87.0 6.14e-01 100.0% 97.5%
2990572 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.89 86.0 6.05e-01 100.0% 98.7%
4884619 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.86 83.0 5.81e-01 100.0% 97.3%
2142463 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.86 82.0 5.83e-01 100.0% 97.6%
D2 medium residues 75-100_121-246
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00740.24 best VP1_2 57.4 1.40e-15 97.4% 23.1%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.91 89.0 5.88e-01 100.0% 34.3%
2g8gA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.84 82.0 5.36e-01 100.0% 30.5%
1s58A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.83 80.0 5.26e-01 100.0% 34.8%
4wwtA01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.51 28.0 3.30e-01 90.8% 77.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3107798 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.96 94.0 6.09e-01 100.0% 32.0%
3107916 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.93 91.0 6.97e-01 100.0% 57.9%
2707659 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.91 89.0 5.84e-01 100.0% 33.5%
2644354 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.84 82.0 5.36e-01 100.0% 30.4%
2990572 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.83 81.0 5.27e-01 100.0% 31.6%
4880563 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.83 80.0 7.29e-01 100.0% 91.5%
2990501 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.82 79.0 5.68e-01 100.0% 54.0%
3108999 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.82 79.0 6.49e-01 100.0% 74.5%
3063115 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.81 77.0 6.92e-01 99.3% 81.8%
3332442 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 28.0 3.99e-01 78.9% 100.0%
4301645 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.52 22.0 2.34e-01 88.8% 40.0%