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capsid_protein_C

Euk-Vir

Ilomantsi_virus

capsid_protein_C__YP_009268568__Ilomantsi_virus__1445557

Identity

Accession:
YP_009268568 ↗
Protein ID:
capsid_protein_C
Kingdom:
euk

Quality

74.5 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Ilomantsi_virus

TaxID: 1445557

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-100
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01003.25 best Flavi_capsid 51.4 1.30e-13 100.0% 57.3%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vg5A00 1.10.10.930 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 71.0 6.81e-01 100.0% 88.9%
5ow2A00 1.10.10.930 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 67.0 6.68e-01 100.0% 98.6%
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.67 48.0 3.43e-01 75.0% 71.8%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.62 43.0 4.11e-01 72.2% 71.8%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.55e-01 77.8% 71.6%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.58 44.0 3.86e-01 81.9% 72.5%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 40.0 3.92e-01 72.2% 97.4%
3hl1A02 6.10.140.1530 Special › Helix non-globular › Helix Hairpins › 0.56 32.0 3.40e-01 72.2% 61.5%
4hwdD00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.56 43.0 4.02e-01 81.9% 94.4%
2lf3A00 1.20.1280.220 Mainly Alpha › Up-down Bundle › Monooxygenase › Effector protein HopAB, BAK1-interacting domain 0.53 42.0 3.82e-01 90.3% 86.7%
4mlmA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 42.0 3.25e-01 97.2% 50.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4295 157.1.1.1 ↗ alpha duplicates or obligate multimers › Flavivirus capsid protein C › Flavivirus capsid protein C › Flavivirus capsid protein C › Flavi_capsid 0.85 74.0 7.45e-01 94.4% 93.2%
3335807 109.4.1.1382 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, TPR_24 0.73 57.0 3.98e-01 84.7% 41.3%
3826565 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.69 50.0 4.09e-01 77.8% 66.7%
4024538 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.66 57.0 4.21e-01 97.2% 84.2%
3462473 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.65 47.0 3.82e-01 75.0% 65.2%
3269341 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.61 47.0 4.45e-01 84.7% 96.7%
3754639 150.5.1.106 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C 0.61 37.0 3.55e-01 72.2% 51.8%
3789157 604.5.1.8 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_2 0.60 48.0 2.96e-01 86.1% 26.4%
3211207 101.1.1.482 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF29683 0.60 42.0 4.34e-01 73.6% 87.1%
3435494 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 44.0 3.56e-01 77.8% 42.1%
2485668 7025.1.1.2 ↗ alpha bundles › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9_C 0.60 37.0 3.51e-01 72.2% 52.4%
4493879 4992.1.1.23 ↗ extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.59 37.0 3.25e-01 84.7% 42.7%
3734558 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 47.0 2.63e-01 98.6% 13.9%
3611632 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.57 38.0 3.36e-01 73.6% 49.0%
3348685 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.56 47.0 3.66e-01 100.0% 82.2%
3895121 4030.1.1.3 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Exog_C 0.55 40.0 4.28e-01 81.9% 90.5%
5060491 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.55 38.0 3.20e-01 72.2% 45.0%
3822360 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.55 46.0 3.55e-01 100.0% 76.2%
4013705 109.4.1.2134 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3, TPR_24 0.54 44.0 3.29e-01 100.0% 60.9%
4177674 4992.1.1.23 ↗ extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.54 38.0 3.30e-01 73.6% 58.2%
3250375 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.54 37.0 3.71e-01 72.2% 89.3%
3350582 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.53 44.0 3.05e-01 100.0% 60.7%
3717518 5054.1.1.17 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8 0.52 45.0 3.06e-01 100.0% 74.2%
3643902 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.52 37.0 3.03e-01 75.0% 47.7%
3411866 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.51 39.0 3.33e-01 84.7% 92.8%