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capsid_protein_C
Euk-VirZika_virus
capsid_protein_C__YP_009430296__Zika_virus__64320
Identity
- Accession:
- YP_009430296 ↗
- Protein ID:
- capsid_protein_C
- Kingdom:
- euk
Quality
73.3
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Flasuviricetes›
Amarillovirales›
Flaviviridae›
Orthoflavivirus›
Zika_virus
TaxID: 64320
Cluster
View cluster (28 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-97
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01003.25 best | Flavi_capsid | 65.5 | 5.10e-18 | 100.0% | 45.3% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vg5A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.88 | 79.0 | 6.89e-01 | 100.0% | 66.7% |
| 3cx5G00 | 1.10.1090.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain F › Cytochrome b-c1 complex subunit 7 | 0.83 | 61.0 | 4.55e-01 | 94.4% | 33.3% |
| 3zliA02 | 1.20.58.1370 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 52.0 | 4.40e-01 | 100.0% | 43.5% |
| 1sqpF00 | 1.10.1090.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain F › Cytochrome b-c1 complex subunit 7 | 0.77 | 56.0 | 4.50e-01 | 96.3% | 40.0% |
| 1vw4L02 | 1.10.246.170 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.69 | 56.0 | 4.86e-01 | 90.7% | 67.1% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 51.0 | 4.49e-01 | 81.5% | 98.7% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.61 | 52.0 | 4.99e-01 | 94.4% | 91.8% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 46.0 | 3.07e-01 | 85.2% | 96.4% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.58 | 47.0 | 4.21e-01 | 90.7% | 62.8% |
| 4mlmA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.58 | 49.0 | 3.44e-01 | 100.0% | 35.1% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 46.0 | 4.21e-01 | 90.7% | 86.3% |
| 2zueA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 51.0 | 3.93e-01 | 100.0% | 65.5% |
| 2z4sA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 44.0 | 4.00e-01 | 98.1% | 70.8% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4295 | 157.1.1.1 ↗ | alpha duplicates or obligate multimers › Flavivirus capsid protein C › Flavivirus capsid protein C › Flavivirus capsid protein C › Flavi_capsid | 0.92 | 85.0 | 7.58e-01 | 100.0% | 74.0% |
| 4807989 | 4982.2.1.0 ↗ | alpha arrays › KaiA/RbsU domain-like › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mitochondrial 54S ribosomal protein L8 C-terminal domain | 0.69 | 56.0 | 5.24e-01 | 88.9% | 75.8% |
| 3547222 | 102.1.1.114 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF26701 | 0.69 | 54.0 | 5.32e-01 | 96.3% | 81.7% |
| 3233890 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 57.0 | 5.37e-01 | 100.0% | 84.6% |
| 3269341 | 101.1.10.22 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6 | 0.63 | 48.0 | 4.21e-01 | 90.7% | 53.3% |
| 4926960 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.63 | 55.0 | 4.18e-01 | 100.0% | 60.0% |
| 1678738 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.60 | 46.0 | 4.45e-01 | 85.2% | 82.0% |
| 3840952 | 601.19.1.39 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C | 0.60 | 45.0 | 4.07e-01 | 92.6% | 58.7% |
| 3789157 | 604.5.1.8 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_2 | 0.60 | 53.0 | 3.12e-01 | 100.0% | 20.0% |
| 3708899 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.60 | 50.0 | 3.85e-01 | 90.7% | 52.2% |
| 3702175 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.58 | 46.0 | 4.00e-01 | 88.9% | 62.4% |
| 3611141 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.55 | 44.0 | 3.90e-01 | 88.9% | 72.5% |
| 3947884 | 101.1.1.393 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › KfrA_N | 0.54 | 44.0 | 4.44e-01 | 98.1% | 92.7% |
| 3583169 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.52 | 43.0 | 3.81e-01 | 92.6% | 81.2% |