capsid_protein_III

Euk-Vir

Pigeon_adenovirus_1

capsid_protein_III__YP_009047098__Pigeon_adenovirus_1__764030

Identity

74.5 mean pLDDT

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Pigeon_adenovirus_1

TaxID: 764030

View cluster (53 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 80-148_404-443_495-544

PDB

Domain cluster: rep: capsid_protein_III__YP_009505659__Fowl_aviadenovirus_6__172862__D107-170_410-455_491-547

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01686.24 best	Adeno_Penton_B	109.1	2.90e-31	44.6%	15.2%
PF01686.24	Adeno_Penton_B	70.8	1.30e-19	31.4%	10.7%
PF01686.24	Adeno_Penton_B	40.0	2.80e-10	27.0%	8.9%

D2 medium residues 149-162_203-266_278-328_379-403

PDB

Domain cluster: rep: III__YP_003933585__Turkey_adenovirus_1__878329__D145-233_253-299_358-382

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01686.24 best	Adeno_Penton_B	199.2	1.40e-58	83.8%	31.1%

D3 medium residues 267-277_329-378

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6mkbA00	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.57	43.0	3.20e-01	82.0%	92.5%

D4 medium residues 444-494

PDB

Domain cluster: rep: penton_base__YP_009109577__Simian_adenovirus_DM-2014__1560346__D385-434

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01686.24 best	Adeno_Penton_B	47.1	1.80e-12	100.0%	10.4%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6jqlA03	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.55	43.0	3.15e-01	100.0%	62.4%
3k67A00	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.54	44.0	3.28e-01	100.0%	57.1%
3ke6A02	3.30.565.10	Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain	0.51	38.0	2.99e-01	88.2%	74.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4977797	222.1.1.0 ↗	a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase	0.54	44.0	3.40e-01	100.0%	65.0%
4014957	323.1.1.0 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases	0.52	41.0	2.82e-01	90.2%	64.5%