capsid_protein

Euk-Vir

Southampton_virus

capsid_protein__AAA92984__Southampton_virus__11984

Identity

76.5 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Caliciviridae› Norovirus› Southampton_virus

TaxID: 11984

View cluster (17 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-220

PDB

Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00915.27 best	Calici_coat	240.0	3.70e-71	100.0%	55.1%
PF00073.27	Rhv	40.0	4.70e-10	74.2%	50.9%

D2 medium residues 230-284_415-534

PDB

Domain cluster: rep: VP1__YP_009679035__Norovirus_GII_Hu_JP_2007_GII.P15_GII.15_Sapporo_HK299__1529918__D230-281_420-543

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08435.18 best	Calici_coat_C	200.8	3.30e-59	73.7%	52.6%
PF00915.27	Calici_coat	27.1	2.70e-06	34.3%	15.8%

D3 medium residues 285-414

PDB

Domain cluster: rep: VP1_capsid_protein__YP_009679041__Norovirus_dog_GVI.1_HKU_Ca026F_2007_HKG__673457__D281-384

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08435.18 best	Calici_coat_C	92.9	3.20e-26	85.4%	46.5%