capsid_protein

Euk-Vir

Human_betaherpesvirus_6B

capsid_protein__NP_050214__Human_betaherpesvirus_6B__32604

Identity

73.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› Human_betaherpesvirus_6B

TaxID: 32604

Singleton — not in a non-trivial cluster

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-165

PDB

Domain cluster: rep: hypothetical_protein_MuHV1_gp054__YP_214062__Murid_betaherpesvirus_1__10366__D4-160

D2 high residues 167-244_256-269

PDB

D3 medium residues 274-399

PDB

Domain cluster: rep: cysteine-rich_protein__YP_009179304__Elephant_endotheliotropic_herpesvirus_4__548914__D310-358_371-477

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03117.21 best	Herpes_UL49_1	150.4	8.40e-44	100.0%	51.1%

D4 medium residues 400-470

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03117.21 best	Herpes_UL49_1	46.2	5.60e-12	59.2%	18.3%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2b9dA01	3.30.160.330	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.66	35.0	4.51e-01	98.6%	94.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5010744	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.53	41.0	4.26e-01	95.8%	92.3%
4995773	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.52	34.0	3.72e-01	78.9%	94.0%