capsid_protein

Euk-Vir

Human_betaherpesvirus_6B

capsid_protein__NP_050237__Human_betaherpesvirus_6B__32604

Identity

87.6 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› Human_betaherpesvirus_6B

TaxID: 32604

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-133_274-294

PDB

Domain cluster: rep: capsid_triplex_subunit_2__NP_077456__Cercopithecine_alphaherpesvirus_9__35246__D3-114_290-314

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01802.24 best	Herpes_V23	160.4	9.00e-47	88.2%	45.3%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cp7B02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.62	28.0	3.31e-01	91.4%	59.0%
1fx0B01	2.40.10.170	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.57	26.0	3.63e-01	84.9%	86.1%
1vw3C01	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.55	27.0	2.90e-01	96.1%	53.4%
1ep3B01	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.53	25.0	2.99e-01	85.5%	64.6%
4ohvA03	2.40.30.330	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain	0.53	31.0	3.95e-01	98.7%	97.8%

D2 medium residues 134-177

PDB

Domain cluster: rep: hypothetical_protein_MuHV1_gp079__YP_214087__Murid_betaherpesvirus_1__10366__D138-179

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01802.24 best	Herpes_V23	27.2	3.40e-06	100.0%	14.5%

D3 medium residues 185-272

PDB

Domain cluster: rep: capsid_triplex_subunit_2__YP_073798__Human_betaherpesvirus_7__10372__D193-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01802.24 best	Herpes_V23	76.2	3.90e-21	100.0%	29.0%