←Back to structures

capsid_protein

Euk-Vir

Horseradish_latent_virus

capsid_protein__YP_006907833__Horseradish_latent_virus__264076

Identity

Accession:
YP_006907833 ↗
Protein ID:
capsid_protein
Kingdom:
euk

Quality

67.0 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Caulimovirus› Horseradish_latent_virus

TaxID: 264076

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 396-450
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00098.29 best zf-CCHC 23.7 5.20e-05 34.5% 100.0%
D2 medium residues 152-232
PDB
Domain cluster: rep: hypothetical_protein__NP_043932__Strawberry_vein_banding_virus__47903__D115-200
D3 medium residues 238-352
PDB
Domain cluster: rep: coat_protein_movement_protein__YP_004347414__Sweet_potato_collusive_virus__930168__D560-659
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22909.2 best Caulimovir_coat_dom 37.2 4.60e-09 94.8% 93.8%