capsid_protein

Euk-Vir

Apricot_vein_clearing_associated_virus

capsid_protein__YP_008997792__Apricot_vein_clearing_associated_virus__1343920

Identity

79.5 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Prunevirus› Prunevirus_armeniacae

TaxID: 1343920

View cluster (18 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-130

PDB

Domain cluster: rep: ORF3__YP_009103998__Carrot_Ch_virus_2__1425362__D3-114

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	108.0	6.90e-31	96.9%	57.9%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vpbA02	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.61	23.0	3.00e-01	98.4%	59.4%
2gfhA02	1.20.120.710	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain	0.58	38.0	4.46e-01	92.2%	100.0%
3behB01	1.20.120.540	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels	0.56	30.0	3.21e-01	73.4%	57.3%
8e9gK01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.56	29.0	3.39e-01	75.8%	70.3%
1s4kA00	1.10.3100.10	Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein	0.52	42.0	4.39e-01	88.3%	91.7%
7ckaA01	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.52	40.0	3.46e-01	82.8%	80.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4128922	5061.1.1.1 ↗	alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY	0.57	40.0	2.77e-01	72.7%	52.0%
3277002	3252.1.1.0 ↗	alpha arrays › SHQ1 C-terminal domain-like › SHQ1 C-terminal domain › SHQ1 C-terminal domain	0.52	46.0	3.76e-01	97.7%	85.3%

D2 high residues 148-220

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	85.1	6.90e-24	100.0%	32.2%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1io1A01	1.20.1330.10	Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain	0.82	58.0	4.30e-01	72.6%	86.4%
2oceA01	1.10.10.650	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like	0.65	57.0	4.94e-01	97.3%	72.6%
2xubA05	6.10.140.1450	Special › Helix non-globular › Helix Hairpins ›	0.65	57.0	5.19e-01	97.3%	72.9%
3ikmA02	3.30.420.390	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 ›	0.61	43.0	3.00e-01	83.6%	21.7%
4n4gA01	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.61	47.0	4.15e-01	84.9%	82.9%
3k1rB00	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.57	44.0	4.40e-01	86.3%	90.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3419760	150.7.1.3 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › CGLD27-like	0.65	51.0	4.83e-01	93.2%	71.8%
4541653	4970.1.1.0 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I	0.60	55.0	4.99e-01	98.6%	76.8%
4267118	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.59	53.0	3.19e-01	98.6%	18.9%
4950238	192.5.1.39 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF4405	0.56	47.0	4.51e-01	90.4%	81.2%