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capsid_protein

Euk-Vir

Human_associated_cyclovirus_10

capsid_protein__YP_009021870__Human_associated_cyclovirus_10__2038728

Identity

Accession:
YP_009021870 ↗
Protein ID:
capsid_protein
Kingdom:
euk

Quality

82.5 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Cyclovirus› Human_associated_cyclovirus_10

TaxID: 2038728

Cluster

View cluster (106 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-97
PDB
Domain cluster: representative
D2 medium residues 98-206
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 54.0 4.69e-01 100.0% 55.2%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 55.0 4.48e-01 100.0% 47.0%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 4.75e-01 100.0% 54.7%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 55.0 4.15e-01 100.0% 39.6%
1smvC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 56.0 4.41e-01 100.0% 55.9%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.80e-01 99.1% 41.3%
4fy1100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 55.0 4.32e-01 100.0% 88.5%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.77e-01 100.0% 41.3%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 3.86e-01 100.0% 42.4%
6aj3B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 53.0 4.59e-01 100.0% 72.3%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 3.77e-01 100.0% 41.3%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.58 31.0 3.46e-01 98.2% 64.7%
4rft000 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 4.42e-01 98.2% 82.2%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 3.99e-01 98.2% 61.9%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 33.0 3.12e-01 98.2% 49.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4872939 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.68 55.0 4.44e-01 100.0% 45.5%
3630685 10.32.1.228 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SID-1_RNA_chan 0.67 48.0 4.49e-01 96.3% 61.5%
3586546 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 44.0 4.20e-01 98.2% 62.3%
3249243 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 41.0 4.07e-01 98.2% 78.8%
3924429 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.65e-01 100.0% 73.3%