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capsid_protein

Euk-Vir

Feline_astrovirus_D1

capsid_protein__YP_009052462__Feline_astrovirus_D1__1538452

Identity

Accession:: YP_009052462 ↗
Protein ID:: capsid_protein
Kingdom:: euk

Quality

65.4 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Stellavirales› Astroviridae› Mamastrovirus› Feline_astrovirus_D1

TaxID: 1538452

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 83-268

PDB

Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03115.21 best	Astro_capsid_N	186.6	7.50e-55	95.2%	71.5%

D2 high residues 271-402

PDB

Domain cluster: rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ztnA02	2.40.30.190	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.80	70.0	6.86e-01	100.0%	86.5%
2gk6A02	2.40.30.230	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.73	46.0	5.64e-01	99.2%	100.0%
2qf4A02	2.40.10.350	Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2	0.62	36.0	4.20e-01	86.4%	82.4%
4rt0A00	2.40.10.220	Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains	0.59	40.0	4.31e-01	91.7%	81.7%
1kzlA02	2.40.30.20	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.58	38.0	4.19e-01	98.5%	85.1%
1vf7F01	2.40.30.170	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain	0.58	43.0	4.74e-01	100.0%	100.0%
2piaA01	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.57	40.0	4.47e-01	100.0%	93.3%
3havA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.55	29.0	3.39e-01	75.0%	73.0%
1jeyB02	2.40.290.10	Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 ›	0.51	39.0	3.40e-01	80.3%	87.6%
1crmA00	3.10.200.10	Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase	0.51	43.0	3.57e-01	96.2%	94.1%
3zpeA00	2.60.90.50	Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) ›	0.50	37.0	3.74e-01	100.0%	76.1%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1877513	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.84	71.0	7.37e-01	90.9%	93.6%
397625	1.1.13.21 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › SP2_M	0.80	69.0	6.81e-01	100.0%	87.1%
3741028	1.1.7.81 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel	0.56	42.0	4.66e-01	100.0%	100.0%
4014641	1.1.7.24 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8	0.55	48.0	4.89e-01	100.0%	96.2%
3707634	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.55	26.0	3.51e-01	77.3%	100.0%
5024800	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.53	43.0	4.52e-01	100.0%	97.5%
2774000	881.4.1.1 ↗	a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C	0.53	29.0	3.27e-01	83.3%	67.0%
3744400	60.1.2.1 ↗	beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku	0.51	39.0	2.96e-01	80.3%	58.1%

D3 high residues 437-577_606-684

PDB