capsid_protein

Euk-Vir

Bromus-associated_circular_DNA_virus_1_Viruses.

capsid_protein__YP_009116644__Bromus-associated_circular_DNA_virus_1_Viruses.__X

Identity

55.0 mean pLDDT

View cluster (8 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 134-187_205-249_303-383

PDB

D2 medium residues 250-302

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2xi9A03	1.10.150.480	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.59	44.0	3.70e-01	83.0%	83.2%
6oinA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	35.0	3.23e-01	88.7%	46.3%
7jw2A01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.54	40.0	2.74e-01	81.1%	59.0%
1t11A02	1.10.3120.10	Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain	0.52	40.0	2.91e-01	88.7%	48.2%
3tqnA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	36.0	3.32e-01	92.5%	54.8%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5037969	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.67	42.0	3.57e-01	88.7%	38.8%
5083086	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	37.0	3.74e-01	79.2%	66.7%
4251290	101.1.2.573 ↗	alpha arrays › HTH › HTH › winged helix domain › NPHP3_hel	0.53	35.0	2.90e-01	90.6%	34.0%
4967694	101.1.1.552 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DUF5806	0.53	39.0	3.56e-01	98.1%	58.7%
3510369	148.1.1.0 ↗	alpha arrays › Histone-like › Histone-related › Histone	0.52	41.0	2.96e-01	100.0%	57.9%