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capsid_protein

Euk-Vir

Bearded_dragon_parvovirus

capsid_protein__YP_009154713__Bearded_dragon_parvovirus__1670662

Identity

Accession:
YP_009154713 ↗
Protein ID:
capsid_protein
Kingdom:
euk

Quality

69.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-124
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08398.16 best Phospholip_A2_4 103.5 8.50e-30 89.9% 100.0%
D2 high residues 216-413_623-674
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00740.24 best VP1_2 235.0 2.20e-69 79.2% 41.1%
PF00740.24 VP1_2 32.9 3.80e-08 22.0% 8.0%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g8gA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.96 94.0 7.03e-01 100.0% 88.5%
1c8dA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.93 90.0 6.69e-01 100.0% 90.0%
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.92 90.0 6.87e-01 100.0% 88.0%
1s58A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.91 89.0 6.71e-01 100.0% 87.4%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.79 28.0 4.35e-01 97.2% 76.1%
3es4A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.79 28.0 4.16e-01 98.4% 70.7%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.79 30.0 4.37e-01 97.2% 74.2%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 30.0 3.55e-01 99.2% 54.1%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 30.0 3.59e-01 99.2% 55.1%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 27.0 3.33e-01 99.2% 53.7%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 27.0 3.65e-01 99.6% 66.4%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 47.0 5.27e-01 97.6% 89.2%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 28.0 3.86e-01 98.4% 76.2%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 26.0 3.59e-01 98.4% 69.1%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 43.0 4.63e-01 98.8% 76.5%
5mqcB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 44.0 4.62e-01 99.2% 73.6%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 46.0 5.31e-01 97.2% 100.0%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.64 36.0 4.75e-01 97.6% 97.9%
7chkB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 35.0 4.71e-01 94.4% 100.0%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 28.0 3.89e-01 98.4% 82.5%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 50.0 4.94e-01 99.2% 79.2%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.62 29.0 4.01e-01 98.4% 88.9%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 5.03e-01 98.0% 95.3%
5wxuA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 27.0 3.28e-01 99.2% 59.9%
1fmd100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 35.0 4.01e-01 98.8% 72.7%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 43.0 4.31e-01 99.2% 68.8%
5jzgA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 41.0 4.30e-01 98.8% 74.3%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 41.0 4.24e-01 98.8% 72.2%
6tfjA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 26.0 3.67e-01 91.2% 84.3%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 23.0 3.78e-01 100.0% 98.9%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 4.41e-01 99.6% 79.8%
2w9xB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 25.0 3.83e-01 94.8% 100.0%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 4.65e-01 100.0% 89.4%
6eiwA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 4.84e-01 98.4% 100.0%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.56 30.0 3.94e-01 94.0% 89.7%
2ws9100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 4.33e-01 98.8% 79.3%
2qcsB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 24.0 3.30e-01 94.0% 77.6%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.55 25.0 3.51e-01 98.4% 87.1%
1uijB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 27.0 3.24e-01 99.6% 69.1%
4qkbA00 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.54 28.0 3.25e-01 97.6% 67.2%
2yc2A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 29.0 3.87e-01 95.2% 100.0%
3cjiA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 4.40e-01 99.2% 85.7%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 29.0 3.84e-01 93.6% 99.3%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.52 30.0 3.75e-01 99.2% 92.1%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 25.0 2.86e-01 99.6% 60.0%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 26.0 3.36e-01 97.2% 83.2%
5j98B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 4.45e-01 100.0% 89.2%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2644354 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.97 95.0 7.08e-01 100.0% 89.0%
3107916 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.94 74.0 6.86e-01 79.2% 69.7%
2990572 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.94 92.0 6.81e-01 100.0% 88.8%
4884619 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.93 91.0 6.69e-01 100.0% 88.7%
2707659 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.92 90.0 6.79e-01 100.0% 85.0%
2142463 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.92 90.0 6.69e-01 100.0% 89.4%
2990501 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.92 72.0 6.06e-01 79.2% 64.3%
3107798 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.92 90.0 6.68e-01 100.0% 88.3%
3108999 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.92 71.0 7.24e-01 79.2% 90.7%
1195 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.91 89.0 6.71e-01 100.0% 87.4%
4880563 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.91 64.0 7.46e-01 71.2% 99.5%
3063115 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.84 62.0 7.05e-01 76.4% 94.9%
1034414 10.2.1.16 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_NS1 0.78 73.0 6.06e-01 97.6% 82.3%
1197 10.2.1.28 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 0.75 70.0 5.80e-01 98.0% 86.7%
3106452 10.2.1.28 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 0.75 70.0 5.81e-01 98.0% 86.7%
1112407 10.2.1.28 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 0.73 68.0 5.80e-01 97.6% 87.1%
3187888 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.73 29.0 3.70e-01 98.0% 60.8%
5033161 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 37.0 5.04e-01 95.6% 100.0%
3473996 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.68 64.0 6.11e-01 98.0% 93.2%
178766 10.2.1.53 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › IHHNV_capsid 0.68 64.0 5.94e-01 98.0% 84.9%
5047632 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.65 29.0 4.20e-01 92.8% 91.8%
4871782 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 23.0 4.01e-01 76.4% 100.0%
5033861 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.64 31.0 4.18e-01 93.2% 86.9%
5039565 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 34.0 4.64e-01 96.0% 100.0%
None 0.63 25.0 3.24e-01 93.6% 61.3%
146645 10.32.1.16 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Clenterotox 0.62 29.0 3.99e-01 98.4% 87.4%
4877367 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.62 35.0 4.04e-01 98.8% 73.4%
None 0.62 25.0 3.23e-01 94.0% 62.0%
3231820 5001.1.1.52 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › SID-1_RNA_chan 0.61 33.0 4.39e-01 98.0% 93.6%
3628503 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.61 36.0 4.49e-01 98.0% 92.9%
3691986 10.32.1.246 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PalB_C 0.61 36.0 4.42e-01 97.6% 91.0%
3404051 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 38.0 4.69e-01 98.0% 100.0%
3889464 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 36.0 4.54e-01 96.8% 100.0%
3646939 10.32.1.212 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.58 34.0 3.88e-01 99.2% 74.4%
5082643 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 36.0 4.42e-01 96.8% 98.1%
3318466 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.57 26.0 3.04e-01 100.0% 56.8%
2321067 10.12.1.13 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin 0.56 27.0 3.41e-01 99.6% 73.5%
3320430 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 27.0 3.58e-01 99.6% 83.8%
3601703 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 36.0 4.28e-01 94.4% 94.3%
3243464 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 31.0 4.09e-01 97.2% 98.6%
2982737 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 44.0 4.24e-01 98.8% 74.8%
3937351 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 32.0 3.91e-01 91.6% 89.7%
3075118 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.53 49.0 4.84e-01 100.0% 93.5%
3519988 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 25.0 3.59e-01 98.0% 96.4%
3311207 10.32.1.212 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.52 25.0 2.73e-01 100.0% 51.6%
3801842 10.2.1.92 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › WAK, GUB_WAK_bind 0.51 32.0 3.52e-01 99.6% 75.1%
4466937 11.1.1.248 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 0.51 24.0 3.21e-01 98.0% 82.3%
D3 medium residues 416-478
PDB
D4 medium residues 501-564_604-622
PDB