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capsid_protein
Euk-VirDromedary_astrovirus
capsid_protein__YP_009162619__Dromedary_astrovirus__1662272
Identity
- Accession:
- YP_009162619 ↗
- Protein ID:
- capsid_protein
- Kingdom:
- euk
Quality
72.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Stellavirales›
Astroviridae›
Mamastrovirus›
Dromedary_astrovirus
TaxID: 1662272
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 425-634
Domain cluster:
rep: capsid_protein_precursor__YP_009041464__Bovine_astrovirus__1435485__D425-658
D2
high
residues 681-751
Domain cluster:
rep: capsid_protein_precursor__YP_009010945__Bovine_astrovirus_B76_HK__1027248__D694-757
D3
medium
residues 70-257
Domain cluster:
rep: coat_protein__YP_009237527__Lake_Sarah-associated_circular_virus-14_Viruses.__X__D77-111_199-281_337-370
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03115.21 best | Astro_capsid_N | 175.6 | 1.60e-51 | 95.2% | 72.3% |
| PF03014.21 | SP2 | 38.9 | 1.10e-09 | 82.5% | 75.1% |
D4
medium
residues 258-382
Domain cluster:
rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442